Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0764 ATGCAGAGAAGGAATCTACTATTCTTTCCCAGAAGCATAACAAACACTTCACTGAATTTCACATCCACAGCTTCATCTCCATCCGCTTCTCTGCTATTGGACTCGTACTGTGAAACCAATCCGCATGTGGATCTCTACTCCAACAACCGAGCAATTGATTCATTGATCAAATCTGGGTCCCTAGCCTCTGCCCTTCACTTGTTCGAAAAAATGCCCATCCGTGATGTAGTTACTTGGAATTTGCTAATTAATGGGTATCGTCAGCATGAACTTCCCAAACAGGCTTTTCAGTACTACAGTGAAATGGTTTTCCAGGGCATTAGAGAAAGTTCCTCCACTTTTTCTTCTGTTTTGAGCGTTTGCAGCAATGCAGGTTTGCACCAGGAGGCAATTCAAGTTCATAGCAGGGTGATTTTTCTCGGGTTCAGTTCGAACTTGTATGTGGCAGGTTCGCTTGTTGATCTTTATATGCAGATGGGAGACTGTGATACTGCCTTAAGATTGTTCAGTAACTTGCCTAGAAGAAATTTGGCTATATGCAATTTGGTTTTACGTGGGTTTTGTGAACTTAGTCGATCGGAATGGTTATTCACCATGTACTCTGCAATGAAAGAAGAATGTGTTAAGCCGAATGGCCTTACTTTCTGTTATTTAATTCGCGGATGTGGTAACGGTAGGTTTTGTGACGAGGGGAAGCAGCTGCATTGTCATGCAATTAAGGTTGGATGGGTAGAAGCTAATTTATTTGCTGCTAATGCTTTGGTGGATTTTTACTGTGTTTGTGGGAATTTGATTGACGCTAAGAAATCATTTGAAGCTATTCGAGATGAGGATGTCATATCATGGAATTCAATTGTTTCTGTGTTTGCTGCTAGTGGTTTGCTTTCTGATGCTCTTGAACTATTTGCTAGGATGCAGTCATGGGGGAAGAAGCCGTCCATCCGTTCATTTGTGGGATTCCTAAATGCAGCTATTGGATGTGACAATATTATTTTTGGGAAGCAAATTCAGAGTCATGTTGTGAAATTGGGTTTTGCTCCTGGGAGTGTCCATGTTGAATCTGCCTTGATCAATATGTATGGGAAATGTGGCGACATCAAAAGCTCAGTATCTGTGTTTGAGAGTGTGCCTGAGAGAACTCTGGAGATCTGCAACTCACTGATGTCATCTTTGTTGCACTGTGGTATTGTTGAAGATGTGCTGGAGTTGTTTGGTTTAATGGTTGATGAGGGAATTGGAGTTGATGAAGTCACTTTGTCCACTTCACTAAAGGCATCGTTAGTATCTGCTTTTGGAAGTTTGGCATGCTGTAGATTGCTGCATTGTTGTGCAATAAAATCAGGTTTTGAATTTGATACTGCAGTTTCATGTTCTTTAATTGATGCATATTCAAAATATGGTCATGTCGAACTTTCACATCAGATTTTTGAACAACTTCATTCACCAAATGCAATATGTTTCACTTCAATCATTAATGGGTATGCACGGAATGGAATGGGCAGAGAAGGCCTTGAAATGCTTGAAATCATGGCTAAACAGGGCCTGAAACCAGATAGAGTGACATTTCTGTGTGCATTGACAGGGTGCAGTCATTCAGGGTTGGTTGAAGAAGGAAGATCGGTGTTTAACTCAATGAAGAGTATTCATGGCATTCACCCAGATCAGCAGCATTATTCATGTATGGTAGATCTTCTGGGTCGTGCAGGTCTGTTAGATGAAGCTGAAGGACTGTTAAAACATGCCCCAGCAAAGAGCGATTCTGTGATGTGGAGCTCACTGCTGCAAAGTTGTCGGATCCATGGTGATACTATAGTAGGAAGAAGAGCAGCAAAAGTCTTGATGGAGCTGGAACCCGAGGACCCTGCAACTTATTTGCAAGCTTCAAGCTTTTACTCTGAAATTGGGGAGCTTGAGATCTCAATGCAAATCAGAGAGATTGCAATTGCAAGAAGAATGAAGAGAGAGATGGGTCACAGTTTAATTGAGGTGAACACTCATGGAGTTGCAGAAAACAGGGTATATGATGACATTGCTATGATTGAAGAGCTCGAAAGCTTTGACATTGAAGAAGGAAATGACGTTGAGTTTTCTGAGAGCCCATTGTGGACAAGTGAACATGTCAGCAAAATTCTTGTGAATGTGGATGCCTTTGGTGCAGCTGGGGATGGGGTTGCAGATGATACCCAGGCCTTCCTAAGTGCATGGGATAAAGCCTGCTCAACACCCAAATCAGTTTTATTGGTTCCTCAAGGAAGGTCTTATCTGGTTAATGCAACAAGATTTAAAGGGCCATGTGCTGATAAGTTACTTATTCAGATTGATGGAACAATTGTAGCACCAGACGAGCCCAAGAACTGGGATCCAAAGAACCCACGAAATTGGCTTGATTTTTCCAAATTGAAGGGTGTTCTTTTCCAAGGGGGTGGAATTATTGATGGCTCAGGCAGCAAATGGTGGGCATCATCTTGCAAAAGGAACAAGTCTAATCCTTGCCGAGGCGCACCAACAGCATTGACTATAGATTCTAGTTCATCTGTATGGGTGAAAGGCCTTACTATCCAAAACAGTCAACAGATGCATTTTACCATTTCCCGGTCTCAATCTGTACGCATAATTGATGTACAAGTCTCAGCTCCAGAAGACAGTCCCAACACTGATGGAATCCATATTACTGATTCAACTAATGTCCTCCTCCAAAACTGCAAAATCGGAACAGGTGATGATTGCATCTCAATTGTCAGTGGCAGCTCTAATATTAAGATGAAGACAATATATTGTGGACCAGGGCATGGAATCAGCATCGGAAGTCTTGGGAAGGACAATTCATCAGGAATAGTTACCAAGGTGGTGCTGGATTCAGCATTCCTCAGAGGGACAACCAATGGCCTCAGGATTAAGACTTGGCAGGGAGGATCTGGCTTTGTTCGTGCAGTGCGTTATCAAAATGTAAGGATGGAAGATGTTGCAAACCCCATCCTTATCGATCAATTCTACTGTGATTCCCCAAATGAATGTAAAAATCAGACATCAGCTGTGCAAATTAGCCAGATCATGTACCGCAACATTAGTGGGACTACAAAAAGCGCCAAGGCCATGAAATTTGCATGCAGTGACTCATTCCCATGCAACAACATAGTGGTGAGCAATATCAACTTGGAGAAGAAGGATGGCACAGTTGAGACCTACTGCAACTCTGCCACAGGCTTTGGATATGGGACAGTACACCCTGCAGCAGATTGCTTGAGTTCCTCTGACAAGGAATGCATTATCAATAACACTGAAAATGAAGAGCTTGCAGAAGCCATCCCAGAGGACCTTGTCCACACTGAGCTCTGA 3336 0.426 MQRRNLLFFPRSITNTSLNFTSTASSPSASLLLDSYCETNPHVDLYSNNRAIDSLIKSGSLASALHLFEKMPIRDVVTWNLLINGYRQHELPKQAFQYYSEMVFQGIRESSSTFSSVLSVCSNAGLHQEAIQVHSRVIFLGFSSNLYVAGSLVDLYMQMGDCDTALRLFSNLPRRNLAICNLVLRGFCELSRSEWLFTMYSAMKEECVKPNGLTFCYLIRGCGNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYCVCGNLIDAKKSFEAIRDEDVISWNSIVSVFAASGLLSDALELFARMQSWGKKPSIRSFVGFLNAAIGCDNIIFGKQIQSHVVKLGFAPGSVHVESALINMYGKCGDIKSSVSVFESVPERTLEICNSLMSSLLHCGIVEDVLELFGLMVDEGIGVDEVTLSTSLKASLVSAFGSLACCRLLHCCAIKSGFEFDTAVSCSLIDAYSKYGHVELSHQIFEQLHSPNAICFTSIINGYARNGMGREGLEMLEIMAKQGLKPDRVTFLCALTGCSHSGLVEEGRSVFNSMKSIHGIHPDQQHYSCMVDLLGRAGLLDEAEGLLKHAPAKSDSVMWSSLLQSCRIHGDTIVGRRAAKVLMELEPEDPATYLQASSFYSEIGELEISMQIREIAIARRMKREMGHSLIEVNTHGVAENRVYDDIAMIEELESFDIEEGNDVEFSESPLWTSEHVSKILVNVDAFGAAGDGVADDTQAFLSAWDKACSTPKSVLLVPQGRSYLVNATRFKGPCADKLLIQIDGTIVAPDEPKNWDPKNPRNWLDFSKLKGVLFQGGGIIDGSGSKWWASSCKRNKSNPCRGAPTALTIDSSSSVWVKGLTIQNSQQMHFTISRSQSVRIIDVQVSAPEDSPNTDGIHITDSTNVLLQNCKIGTGDDCISIVSGSSNIKMKTIYCGPGHGISIGSLGKDNSSGIVTKVVLDSAFLRGTTNGLRIKTWQGGSGFVRAVRYQNVRMEDVANPILIDQFYCDSPNECKNQTSAVQISQIMYRNISGTTKSAKAMKFACSDSFPCNNIVVSNINLEKKDGTVETYCNSATGFGYGTVHPAADCLSSSDKECIINNTENEELAEAIPEDLVHTEL* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0764 1111 Pfam PPR repeat family 482 530 IPR002885 -
Vvi1g0764 1111 Pfam PPR repeat family 74 121 IPR002885 -
Vvi1g0764 1111 FunFam Pectin lyase-like superfamily protein 700 1084 - -
Vvi1g0764 1111 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Vvi1g0764 1111 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 454 676 - -
Vvi1g0764 1111 SUPERFAMILY Pectin lyase-like 708 1081 IPR011050 -
Vvi1g0764 1111 Gene3D Tetratricopeptide repeat domain 500 676 IPR011990 GO:0005515
Vvi1g0764 1111 Gene3D Tetratricopeptide repeat domain 197 331 IPR011990 GO:0005515
Vvi1g0764 1111 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Vvi1g0764 1111 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Vvi1g0764 1111 FunFam PPR superfamily protein 24 139 - -
Vvi1g0764 1111 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Vvi1g0764 1111 Pfam PPR repeat 280 309 IPR002885 -
Vvi1g0764 1111 Pfam PPR repeat 354 376 IPR002885 -
Vvi1g0764 1111 Pfam PPR repeat 151 176 IPR002885 -
Vvi1g0764 1111 Pfam PPR repeat 558 579 IPR002885 -
Vvi1g0764 1111 Pfam PPR repeat 383 412 IPR002885 -
Vvi1g0764 1111 Pfam Glycosyl hydrolases family 28 743 1064 IPR000743 GO:0004650|GO:0005975
Vvi1g0764 1111 Gene3D - 701 1109 IPR012334 -
Vvi1g0764 1111 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 132 IPR046960 GO:0003723|GO:0009451
Vvi1g0764 1111 Gene3D Tetratricopeptide repeat domain 24 139 IPR011990 GO:0005515
Vvi1g0764 1111 Gene3D Tetratricopeptide repeat domain 332 431 IPR011990 GO:0005515
Vvi1g0764 1111 NCBIfam pentatricopeptide repeat 383 415 IPR002885 -
Vvi1g0764 1111 NCBIfam pentatricopeptide repeat 280 313 IPR002885 -
Vvi1g0764 1111 NCBIfam pentatricopeptide repeat 485 518 IPR002885 -
Vvi1g0764 1111 NCBIfam pentatricopeptide repeat 77 107 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0764 Vvi-Chr1 7724620 7730309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0764 673 1106 Glycoside Hydrolase AT1G23460 70.872 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0764 - - pvu:PHAVU_003G061700g 1360.13