Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0761 ATGTTGGGAGGCAGCAATAGCAATCATATGCTTCCTGTTTTCCTGGGCGAGAGTGGTTTCCAGTGTCACACGAATGCATCAAATCAGTTGCAGTTATTTGGGAATTTACCAGCTGGGTGTGGTGTTGATCCTGTAAATTACTTTGGAAATGAGCTTAACACTTCCATGCTTCAGCCCAACAAACGAGGTAGGGAAGCAGAAGATTTCACAAGGCGGCAAAAACTTCATATTTCTTTGAATGAAGCAGAAGAAATCTCTAGGCGGCAAAAGCATCAAATTTCCTTCAAGTATAACATTTCTCAAGATGAAGCCGACCGATCTGCAAGTTTTCTCAACCAGAATCCTGTGTCAACTGGGCTAAAGCTATCATATGATGATGATGAGCACAATTCCTCAGTTACATCAAGTGGAAGCATGACAGCGGCACCATCAATCATCCTGTCACTTGGTGACAGTATTGGGGCTGAGCTCGACAGACAGAAAGAAGAATTTGATCAGTACATCAAAATTCAGGAAGAACACTTGGTGAAGGGGGTAAGGAACATGAGGCAGAGACACATGACTTCCTTCCTGGCTCCCATAGAGAAAGTTGTCAGAAAGAAGTTACGTGAGAAAGATCTTGAGTTAGAGAACATGAACCGCAAGAATCGGGAATTGGTTGAGAGAATAAAGCAGGCAGCGGTTGAAGCCCAGAATTGGCACTACAAAGCAAAGTACAATGAGTCTGTGGTTAATCTCTTGAAGAACAACCTCCAGCATGCAATTTCACAGGGGGCTGACCAAGGGAAGGAAGGATTTGGAGACAGTGAAGTTGATGATGCTGCTTCTTATATTGACCCACACAATATGGTCATACCAGGTGGCCCTGGGAGGGCAAATTCCCAGAATAAAGAAGGCTTGAAGGAGCAAATGATTTGCCGAGCATGCAAGAGTAAGGAAGTTTCCATCTTGTTGATTCCTTGTAGGCACCTGTGTATATGTAAGGAATGCGAAGGGTTAATTAGTGTTTGTCCCGTCTGCCAGTCTATGAAAACTACCGGCGTGCAGGTGTACTTGTCCTAA 1062 0.4416 MLGGSNSNHMLPVFLGESGFQCHTNASNQLQLFGNLPAGCGVDPVNYFGNELNTSMLQPNKRGREAEDFTRRQKLHISLNEAEEISRRQKHQISFKYNISQDEADRSASFLNQNPVSTGLKLSYDDDEHNSSVTSSGSMTAAPSIILSLGDSIGAELDRQKEEFDQYIKIQEEHLVKGVRNMRQRHMTSFLAPIEKVVRKKLREKDLELENMNRKNRELVERIKQAAVEAQNWHYKAKYNESVVNLLKNNLQHAISQGADQGKEGFGDSEVDDAASYIDPHNMVIPGGPGRANSQNKEGLKEQMICRACKSKEVSILLIPCRHLCICKECEGLISVCPVCQSMKTTGVQVYLS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0761 353 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 49 350 IPR017066 -
Vvi1g0761 353 PIRSF SBP1_RNase_bind 1 353 IPR017066 -
Vvi1g0761 353 Pfam Zinc finger, C3HC4 type (RING finger) 303 342 - -
Vvi1g0761 353 Coils Coil 202 229 - -
Vvi1g0761 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 353 IPR013083 -
Vvi1g0761 353 ProSiteProfiles Zinc finger RING-type profile. 306 341 IPR001841 -
Vvi1g0761 353 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 290 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0761 Vvi-Chr1 7709619 7712767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0761 305 342 Miscellaneous Gene Families AT2G21380 42.105 1.20e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0761 K19042 - vvi:100248199 712.605