Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0749 ATGTCCTTCATCCGTTTTGTTTGCATTGTAGGGAGTCAGTTTAGGAGTCGGTTGAGTCTGGAGTCACATTCCTGGAGGAGAGTTCGAGGACGATTGATCAGAGCAGATTCATATCCGAGTTCAGATAGTTCAGTTGAGATGTCAGACGAGCTAGCTTCCACACTTGCTTCCATTCAGGAGTTCATGGCCGGAGTCAGTAGACGCTTGGATCAGTTAGAGAGTTCTCGCCAGGATCCTCATCCGGCCGGCATGGTCACTGACGAGACGATTCCTCATGCATCTCAGACAGCACAGACTCGTCCACCTGGGGTTTCACTTAGTACTCCATTCCATCTGGCAGATCATTATGAGACCATTCCACCACCTACTGTCACAGTACCGCCTCCCATGGTTCCTACTATTGGGGATACTCGATTGGCCGAGCAGGAGGCCAAGGTTGAGAGGCTCGAGTCCATGATGAGACAGATCAGATTGCAGGACGGAGGTTTGACTTGGGATGACAGAGATGGCATACCGGCGGCTAGCTTGCCCGCCAAGTTTCGCATGCCAGACATTGAGCGCTACAGTGGGATTGGTTGTCCCAAGATCCATTTGAGATTATACAGCACTGTCATGAGGGTGCACGGGATAGATGATGCACAGCTGGTGGCCCTCTTTCCCATGTCACTTAGTGGGGCAGCTCAGAGATGGTTTGCTTCAGTTGAGCCTTCGAGACTCCGCACTTGGGAGGATGTGGCTCGTGAGTTCCTGACCCAGTTCGCTTTCAGTGCCGATATTGACGTATCTAGACGAGAGTTGGAGGCCACCAGACAGAGGCCAGATGAGTCTATTTCTTCCTTCGTCACTCGTTGGAGGGCGAAGGTGGCTGGTATGATAGATCGGCCTAAGGAGCAGGATCAGATTGATATGGTTCTTCGGAACCTACAGCCGAGGTTCGCTAGACGTCTGGTGGGCATCCCATTTCAGGATCTTAGGAGTTTGGTTCATGCTGCTTTCAGTGTAGAGGAGGCTATGGCTCGAGGATTATGGACAGATACTACTCCTTCCCCTGACAGTAAGGGGAAGAAGCTGATTGGACCATTGACTAGATCTGGAGAGGTTGGTGCTATTAGTTATCAGCACCAGAGGCCCGCGCATCACGCAGCTTATAGGTCTCCTACAGTCAGAGCTCCTTTCTCTCTTCCACAGTATCAGTATCAGTTGGATTATGCTCAGGAGCCTTACATTGCTCAGACTAGCATGCAGCCACGACCACCACATCCGAGAGCCGCTACTCGCCCACCGCTTAGACCATATGCACAGAGGCCCCCGAGACAGTTCACTCCCTTGGGCATGACTTTGACTAGAGCTTTTGAGAAGCTCAGAGACGCTGGAGTGATTGTTCATTTGGCACCGAGGCCTTTGCCCCATCCTATTCCTCCCCATTTTCGTTCACATGAGCACTGCTTGTATCATCAGATTCCGGGGCACGATACTGAGCATTGTTCAGCACTCCATCATGCGATACAGGATTTGATCGATTCAGGGGTGGTTGACTTGGCTAGGCCAAGTGTGACCACCAATCCCCTGCCTGCACATTCTACACATGCAGTTCCTCCTCCTCCTGGTCTTCAGTAG 1617 0.517 MSFIRFVCIVGSQFRSRLSLESHSWRRVRGRLIRADSYPSSDSSVEMSDELASTLASIQEFMAGVSRRLDQLESSRQDPHPAGMVTDETIPHASQTAQTRPPGVSLSTPFHLADHYETIPPPTVTVPPPMVPTIGDTRLAEQEAKVERLESMMRQIRLQDGGLTWDDRDGIPAASLPAKFRMPDIERYSGIGCPKIHLRLYSTVMRVHGIDDAQLVALFPMSLSGAAQRWFASVEPSRLRTWEDVAREFLTQFAFSADIDVSRRELEATRQRPDESISSFVTRWRAKVAGMIDRPKEQDQIDMVLRNLQPRFARRLVGIPFQDLRSLVHAAFSVEEAMARGLWTDTTPSPDSKGKKLIGPLTRSGEVGAISYQHQRPAHHAAYRSPTVRAPFSLPQYQYQLDYAQEPYIAQTSMQPRPPHPRAATRPPLRPYAQRPPRQFTPLGMTLTRAFEKLRDAGVIVHLAPRPLPHPIPPHFRSHEHCLYHQIPGHDTEHCSALHHAIQDLIDSGVVDLARPSVTTNPLPAHSTHAVPPPPGLQ* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0749 538 MobiDBLite consensus disorder prediction 420 435 - -
Vvi1g0749 538 Coils Coil 139 159 - -
Vvi1g0749 538 PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN 157 517 - -
Vvi1g0749 538 Pfam Retrotransposon gag protein 218 308 IPR005162 -
Vvi1g0749 538 MobiDBLite consensus disorder prediction 412 440 - -
Vvi1g0749 538 MobiDBLite consensus disorder prediction 517 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0749 Vvi-Chr1 7600725 7602341 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0749 - - vvi:104877558 1003.43