Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0737 ATGAAGAGAGACAAGAATCCACGTCTTGTTTTTCTTTTGGTTTTTCTGGTTCTAATCTTCACCACATTGTCTATAACTTCTGTGGATGCCAGAAAGCATCACAGCAAGAAGAGCAGATCCCATTCTAAGCATCATAAACACAGAAGTGGCAATGGCAACAGTGCTCCTGATTCTGAAAATCCTCCAGCTCCTGCGCCAGCCCCTCTTCCTCCTTATGCTTCCTATCCGCCCCAGTCCAGAATTTTTGATGTTTTGTCCTTTGGAGCTAAGGGTGATGGAATCTCAGACGACTCTAAGGCACTTCTAGCAGCATGGGGAGCTGCCTGCAAGGTACCTGGGGCTACTCTAGAAATTCCATCAGAATTCAAGTTTCTTATTGAACCCATAACACTACAAGGCCCATGTATGCCTCGCCTCGTTCTTCAGATAGATGGGACTCTCTTGGCTCCTCCAAAAGTGGCTTCCTGGCCAAAATCCAGTTTGTTTCAATGGATAAACTTTAAATGGCTCCATAACTTCACCATCCAAGGTACTGGTACTGTTGATGGTCAAGGTTCAAATTGGTGGAGCCTCTCCCAGATCCATTATATTCAGAAGAGATCCAAAGACATCCCAAATATGAAACCAACTGCCTTGAGATTCTATGCCAGCTATGATGTCACCGTTTGCAATATCCGAATCATAAACAGCCCTCAGTGCCATCTAAAATTTGACTACTCTGGCAGAGTGAATGTTACCAATATCACAATATCTTCACCAGAGAACAGCCCAAACACTGATGGCATTCACCTGCAGAACACCCAAGATGTGGAAATTCAGCATTCCAATATTGGATGTGGAGATGACTGTGTCTCCATACAAACTGGTTGCTCTAACGTCCATGTTCATCATATTAACTGTGGGCCTGGACATGGAATAAGCTTAGGAGGACTAGGGAAAGAAAAAAGTGCGGCATGCGTCTCTAATCTAGTTGTTGATAACATCTCAGTGCAAAATGCACTATATGGAGTAAGGATCAAAACATGGCAGGGTGGTATTGGATCTGTCAAGAATGTGTCATTTTCCAATATTCAGGTCTCCGATGTAAAGGTGCCTATAATGATTGACCAGTACTATTGTGACAAGCATATCTGCAAGAACCAGACAGGAGCCGTGGCAATATCTGGGGTTACATATAATCAAATAATTGGGACTTATTCAGTGCAGCCCATTCATCTAGCTTGCAGCAACAATGTGCCATGCACTGACGTCGATCTAATTGATATTCAGTTGAATCCATCCCCAAGATACCGAAGTTTCCAACAGGCCTTGTGTTGGAACTCTTATGGCAAATCACAAGCTCCCCTTGTTCCTTCAAGCATAGATTATTGCTTACGAAGACATAGTGGTTCTTTCATGGAAATAGCTAAATCACATGAGATTATATGCCAACGATCATGA 1440 0.4313 MKRDKNPRLVFLLVFLVLIFTTLSITSVDARKHHSKKSRSHSKHHKHRSGNGNSAPDSENPPAPAPAPLPPYASYPPQSRIFDVLSFGAKGDGISDDSKALLAAWGAACKVPGATLEIPSEFKFLIEPITLQGPCMPRLVLQIDGTLLAPPKVASWPKSSLFQWINFKWLHNFTIQGTGTVDGQGSNWWSLSQIHYIQKRSKDIPNMKPTALRFYASYDVTVCNIRIINSPQCHLKFDYSGRVNVTNITISSPENSPNTDGIHLQNTQDVEIQHSNIGCGDDCVSIQTGCSNVHVHHINCGPGHGISLGGLGKEKSAACVSNLVVDNISVQNALYGVRIKTWQGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKHICKNQTGAVAISGVTYNQIIGTYSVQPIHLACSNNVPCTDVDLIDIQLNPSPRYRSFQQALCWNSYGKSQAPLVPSSIDYCLRRHSGSFMEIAKSHEIICQRS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0737 479 PANTHER - 80 444 - -
Vvi1g0737 479 MobiDBLite consensus disorder prediction 32 49 - -
Vvi1g0737 479 MobiDBLite consensus disorder prediction 31 70 - -
Vvi1g0737 479 Pfam Glycosyl hydrolases family 28 114 430 IPR000743 GO:0004650|GO:0005975
Vvi1g0737 479 Gene3D - 72 469 IPR012334 -
Vvi1g0737 479 SUPERFAMILY Pectin lyase-like 73 454 IPR011050 -
Vvi1g0737 479 SMART pbh1 290 310 IPR006626 -
Vvi1g0737 479 SMART pbh1 267 288 IPR006626 -
Vvi1g0737 479 SMART pbh1 320 341 IPR006626 -
Vvi1g0737 479 SMART pbh1 240 266 IPR006626 -
Vvi1g0737 479 SMART pbh1 349 370 IPR006626 -
Vvi1g0737 479 FunFam polygalacturonase At1g48100 71 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0737 Vvi-Chr1 7453821 7456478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0737 1 476 Glycoside Hydrolase AT3G26610 60.619 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0737 K01213 - vvi:100243159 927.546