Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0712 ATGACCAATAATAATAATAATAATATTCCAGTGAATGAAATGCACTGGCCTTTGGTGGATAAAGCTGACAAGAAGAAGCCCAAAATTAGGGATTTGCCCTATTGTCAGGGGAACCGGAAGCAAAGGCTTGAACAACAGAGAAAGGCTCTTCCAATAGCTTCAGTTGAGAAACGACTTGTGGAGGAAGTCCAAAAGAATGACACACTGATAATTGTTGGTGAAACTGGAAGCGGAAAAACAACACAGTTACCTCAGTTTCTACTCAATGGTGGATTTTGTCATGATGGAAAAATCATTGGGATCACTCAACCCAGACGCGTTGCAGCTGTCACTGTTGCAAAACGGGTAGCTGAAGAGTGTGGTGTTGAGTTGGGTCAAAAGGTTGGATATTCCATAAGATTTGAGGATGTTACTTCTAGTTCAACGAGGATCAAGTATATGACAGATGGATTGCTACTAAGGGAAGCATTACTGGATCCATTTCTCTCTAGGTATTCAGTTATCATTGTTGATGAAGCTCATGAGAGAACCATTCACACTGATGTGTTGCTGGGCTTATTGAAAAATGTACAAAATGCAAGGTCAAGATCTATCAATAAATGTCTTAATATTGAAAATACGGAGGCAAACTATGGCAAACTGTTGAAGAGAGAAAATGATGCTAACTGTGTCAGTATTCTCAAGAGATGCCAAGGTGTAAAATTCCCTTCCTTGAAGTTGATCATAATGTCTGCCAGCTTGGATGCACGGGGTTTCTCTGAGTACTTTGGTGGTGCAAGATCTGTATACATTCAAGGGCGACAGTTTCCTGTGGATATTTTTTATACCCATCATGCTGAGCCAGATTATGTAGATGCAGCCTTAATTACTATATTTCAGATTCATTTGGAGGAGGGCCCTGGTGATATACTTGTATTTTTGACTGGGCAAGAAGAGATTGAATCTGTTGAGAGACTTGTGCAAGAGCGACTTCGGCAATTACCTGAAGGAAGTCAAAAGCTTCTAACTGTTCCCATATTCTCATCTCTCCCCTCAGAACAGCAAATGAAAGCTTTCATGCCAGCTCCAGCTGGGTTCCGTAAGGTAATATTGGCAACAAATATTGCTGAGACATCGGTTACAATACCTGGAATCAAGTATGTTATAGATCCTGGAGTGGTGAAAGCGCGCACTTACAATGCACATACGGGGATTGAGTCATTGGATATTGTTAAAACGTCAAAAGCACAGGCTCTTCAAAGGAGTGGACGTGCAGGGCGTGAAAGACCTGGGAAGTGCTTTCGGCTCTACCCAGAGAGTGAATTTGGACAACTTGCAGATTCTACAGAGCCAGAGATCAAGCGTTGCAACCTCTCAAATGTCATTTTGCAGCTTAAGGCTTTAGGTGTGGATGATATTATTGGGTTCGACTTCTTGGAAAAACCATCAAGGATGGCTATTGTCAAATCATTGGAGCAGTTGTTCTTGCTAGGTGCTATAACAGATGATTCTAAGCTGTCAGATCCTATTGGGCATCAAATGGCTCGTCTGCCTTTAGACCCTGTTTATTCCAAAGCTCTCATCCTAGCTAGTCAGTTCAACTGTTTGGAAGAAATGTTGATAGCTGTGGCAATGCTCTCAGTGGAATCTATTTTTTATACCCCTCGTGAGAAGTTAGAAGAGGCGAGAACTGCGATGAAATGCTTTTCAAGTCCAGAGGGGGACCATATTACCTTGATTAATGTATACCGGGCCTCTGATGAGTTTGTAGAGAAGATCAAGCAGGGAAATGATAAAGAAAAGACTGAAAAAAAATTGAGAAAGTGGTGCAAAGAAAATTTCATCAATAGTCGGTCTCTGAGGCATGCTCGTGACATTCACAGTCAAATTCGACGACATGCTGAACAAATGGGTCTTTGTGTTGCTTCTTGTGGAGATGACATGCTTCAGTTTCGCAGATGCCTTGCTGCTTCCTTCTTCCTCAATGCCGCTTTGAAGCAACCTGAGGGTACATACAGGGCATTGGCAAGTGGTCAGTCGGTGCGGATCCATCCTTCTTCTGTGTTATTCCGGACAAAGCCAGAGTGTATAATTTTCAATGAACTAGTGCAAACTAATCATTGCTACATTCGCAACATAACTAGAATCGATTTCTTGTGGCTACCTGAACTTGCTCCTCAATACTACGCTGTGCAGAATTAG 2181 0.4204 MTNNNNNNIPVNEMHWPLVDKADKKKPKIRDLPYCQGNRKQRLEQQRKALPIASVEKRLVEEVQKNDTLIIVGETGSGKTTQLPQFLLNGGFCHDGKIIGITQPRRVAAVTVAKRVAEECGVELGQKVGYSIRFEDVTSSSTRIKYMTDGLLLREALLDPFLSRYSVIIVDEAHERTIHTDVLLGLLKNVQNARSRSINKCLNIENTEANYGKLLKRENDANCVSILKRCQGVKFPSLKLIIMSASLDARGFSEYFGGARSVYIQGRQFPVDIFYTHHAEPDYVDAALITIFQIHLEEGPGDILVFLTGQEEIESVERLVQERLRQLPEGSQKLLTVPIFSSLPSEQQMKAFMPAPAGFRKVILATNIAETSVTIPGIKYVIDPGVVKARTYNAHTGIESLDIVKTSKAQALQRSGRAGRERPGKCFRLYPESEFGQLADSTEPEIKRCNLSNVILQLKALGVDDIIGFDFLEKPSRMAIVKSLEQLFLLGAITDDSKLSDPIGHQMARLPLDPVYSKALILASQFNCLEEMLIAVAMLSVESIFYTPREKLEEARTAMKCFSSPEGDHITLINVYRASDEFVEKIKQGNDKEKTEKKLRKWCKENFINSRSLRHARDIHSQIRRHAEQMGLCVASCGDDMLQFRRCLAASFFLNAALKQPEGTYRALASGQSVRIHPSSVLFRTKPECIIFNELVQTNHCYIRNITRIDFLWLPELAPQYYAVQN* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0712 726 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 166 175 IPR002464 -
Vvi1g0712 726 PANTHER ATP-DEPENDENT RNA HELICASE 38 714 - -
Vvi1g0712 726 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 268 442 - -
Vvi1g0712 726 Gene3D - 13 267 IPR027417 -
Vvi1g0712 726 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 645 721 IPR011709 -
Vvi1g0712 726 SMART ha2_5 482 573 IPR007502 GO:0004386
Vvi1g0712 726 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 60 265 IPR014001 -
Vvi1g0712 726 SMART ultradead3 38 274 IPR014001 -
Vvi1g0712 726 FunFam ATP-dependent RNA helicase DHX8 469 566 - -
Vvi1g0712 726 Gene3D - 268 441 IPR027417 -
Vvi1g0712 726 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 288 462 IPR001650 -
Vvi1g0712 726 Pfam Helicase associated domain (HA2) 483 607 IPR007502 GO:0004386
Vvi1g0712 726 FunFam probable ATP-dependent RNA helicase DHX35 18 211 - -
Vvi1g0712 726 Gene3D - 469 566 - -
Vvi1g0712 726 CDD DEXHc_DHX33 50 264 - -
Vvi1g0712 726 CDD SF2_C_RHA 269 430 - -
Vvi1g0712 726 SMART helicmild6 314 422 IPR001650 -
Vvi1g0712 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 612 IPR027417 -
Vvi1g0712 726 Pfam Helicase conserved C-terminal domain 291 420 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0712 Vvi-Chr1 7153810 7167132 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0712 K12818 - vvi:100262984 1429.08