Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0707 ATGTATAGAAGTCTTGGCCGACATCGGCTTGCATATCGTGCACAAATATCCAGCTATGTTAAAGCAGGTTTGATCGATCAAGCTCTCAAAACTTTTGATGAGATGACTAAATCCAATTGCCGTGTGTTTAGTATTGACTACAATAGATTTATTGGAGTGTTGGTTCGTCAATCTCGATTTGATTTGGCAGAGCAGTATTACGATAGAATGATACCACAAGGCTTTTCTTTGAATTCATTTACATATTCAAGGTTCATTTCTGGTTTGTGTAAGGTGAAGAATTTTGTCCTTATTGAGAAACTTCTAGAGGACATGGATAGGCTTGGATATGTGCCTGATATCTGGGCTTATAATATATATCTGAATCTTTTGTGCTGTGAGAACCAGCTAGATGTGGCTCTAGGGGTAGTGCAGACCATGGTTGAAAAGGGAAGAGAGCCTGATATTGTAACCTATACCATAGTCATCAATGGGCTGTGTAGAGCAGGAAGGTTTGATTCTGCTGTTGAAATTTGGCGTAATATGGTTAGAAAGGGGTTTAGTCCTGATGAAAAAGCTTGCAGGGCACTTGTCCTTGGTTTGTGTCATGATGGGAAGGTTGATTTAGCTTATGAGCTCACGGTGGGTGCAATGAGGGGACGAATTAAGTTTAGTAAGTCAATTTACAATTCTCTTATCAATGGGTTTTGTCAGGCTGGTTGGATTGACAAAGCACAATCGATTATATCCTTCATGAGAAGGAATGGATGTGAGCCAGATTTGGTTACATACAATGTGCTGCTAAACTACTGTTGTGATGAGCTCCTGCTGGAGGAGGCCGAGAATTTGATGAAGAAGATGGAAAGGAGCGGGGTGGAACCCGATGTATATAGTTACAATGAACTTCTTAAGGGCCTTTGTAAAGCTAACCGGTTAGACAAGGCTTATATGATGATGGTGAACAAGATGGAGGCCAAAGGATTGTGTGATGTTGTATCCTACAATACCATCATTAAAGCGCTTTGCACGGCGTCCCATACTAAAAGGGCATACAAGTTATTTGAGGAGATGGGTGGAAAGGGGATTACTCCTGATGTGGTGACCTTTACCATACTTATAAAAGCTTTTCTTAGAGAAGGTAGTTCAAACATAGCCAAGAAGCTTCTTGATCAGATGACAGGATTGGGTTTGTTACCAGATCGTGTACTGTACACTACAATTGTTGATCACCTGTGTAAGACTGGGAAAATGGGGATGGCTCACAGTGTTTTTTGTGACATGGTAGAGAGTGGGATAACTCCTGATGTAGTTTCATACAATGCCCTCATAAATGGGCTTTGCAGGGCTTCCAGAGTAAGTGAAGCCATGCATCTATATGAGGATATGCATACTGGAGGACCTTGTCCTGATGAGGTGACTTTTAAATTGATCATAGGGGGGCTCATATGGGAAAAGAAGCTCTCAGTGGCCTGTAGGGTGTGGGATCAGATGATGGAGAAGGGCTTTACTCTTGATGGAGCTGTTTCTGAGACTCTAGTTAATGCCATCCATTCAAATGATGCATCCTGCATGAATATCTGA 1560 0.4167 MYRSLGRHRLAYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDRMIPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEKGFTLDGAVSETLVNAIHSNDASCMNI* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 319 IPR002885 -
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 8 42 IPR002885 -
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 116 149 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 325 359 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 430 464 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 16 41 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 47 78 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 290 321 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 360 393 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 150 184 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 80 114 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 395 429 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 221 253 IPR002885 -
Vvi1g0707 519 NCBIfam pentatricopeptide repeat 255 289 IPR002885 -
Vvi1g0707 519 Gene3D Tetratricopeptide repeat domain 313 410 IPR011990 GO:0005515
Vvi1g0707 519 Gene3D Tetratricopeptide repeat domain 411 516 IPR011990 GO:0005515
Vvi1g0707 519 Gene3D Tetratricopeptide repeat domain 7 95 IPR011990 GO:0005515
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Vvi1g0707 519 Pfam PPR repeat family 252 301 IPR002885 -
Vvi1g0707 519 Pfam PPR repeat family 112 161 IPR002885 -
Vvi1g0707 519 Pfam PPR repeat family 323 370 IPR002885 -
Vvi1g0707 519 Pfam PPR repeat family 392 441 IPR002885 -
Vvi1g0707 519 Gene3D Tetratricopeptide repeat domain 96 212 IPR011990 GO:0005515
Vvi1g0707 519 Gene3D Tetratricopeptide repeat domain 213 312 IPR011990 GO:0005515
Vvi1g0707 519 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 3 504 - -
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Vvi1g0707 519 Pfam PPR repeat 80 109 IPR002885 -
Vvi1g0707 519 Pfam PPR repeat 16 40 IPR002885 -
Vvi1g0707 519 Pfam PPR repeat 465 495 IPR002885 -
Vvi1g0707 519 Pfam PPR repeat 221 250 IPR002885 -
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Vvi1g0707 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0707 2 509 Glycosyltransferase AT1G05670 27.006 2.08e-59 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0707 - - vvi:100261187 1051.58