Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0693 ATGGGAGGGAAAAGTTCGAAACGGCGGAGTGGGAGAGAATATCCATCGTTTGAATCGTCTTCATTCAACCACCATGGTTACTCACAGTCACAGCCTTATGAGGAGGCCTATCCAGCCCAGCCATACCACACGCCGCAGCACCACAGCCCTCCTCCACCTCGCTACTACAGCGGTGCTCAAACTCCTCACCGGCACCCCCAATTGGACCGGCGTTACTCCAGGATAGCTGATAATTATAATAGCTTGGATCAGGTTACTGCTGCTCTTGCTCAAGCTGGCCTTGAGTCTTCTAACCTCATTGTTGGTATTGACTTCACCAAGAGTAATGAGTGGACAGGTTCCAGGTCATTCAATAGGAAGAGCTTACATCACATTGGAAGGGGTCAAAATCCATATGAGCAAGCAATAAGTATTATTGGGAAGACCTTATCTGCATTTGATGAGGATAACTTGATTCCCTGCTTTGGATTTGGAGATGCCTCAACACACGATCAAGACATCTTCAGTTTCTACCAGGACGAGAGGCCCTGCAATGGATTTGAAGAAGTACTGATGAGATACAGAGAATTGGTTCCCAGCCTTCGACTTGCAGGACCCACCTCTTTTGCACCCATCATTGAAATGGCCTCGACCATTGTTGAGAAAAGTGGTGGCCAATACCATGTTTTGCTGATAATCGCTGATGGACAGGTGACACGAAGCGTTGATACACAGCATGGCCAGCTCAGCTCTCAAGAGCAAAAGACGATCGACGCAATTGTAAAAGCAAGTAAGTACCCCTTGTCAATAATTTTGGTTGGGGTTGGAGATGGGCCTTGGGATGTGATGAGGGAGTTCGATGACAACATCCCTGCTCGTGCCTTCGATAATTTCCAGTTCGTGAATTTTACAGAAATTATGTCAAAGAATGTTGATTCATCGAGAACACAGACAGAGTTTGCTCTTGCAGCCTTGATGGAAATTCCTTCCCAATATAAAGCAACTATTGATCTCAATACACTGGGTGTAAGGAGAGGGAATGCTCCTACTAGGGTTGCTCTCCCCCCACCCCAGTATGGAACACCTTCTTTCAGCAGCAGCTCAAAACCTTACCACTCGAACAGTTTCCAAAAAAGCGCTGAGTCTTATCCTGAATATGAGGCAGCAGTCAGCACAGGCCCATCTTCTAATTCTCTTTATGATAACAAGGTTTGCCCCATTTGTCTCAGTAATCCAAAGGATATGGCTTTTGGTTGTGGTCATCAGACTTGCTGTGAGTGTGGAGTAGACCTCAATTCATGCCCCATTTGCCGAAGCCCGATCCAGACTAGAATAAAGCTGTATCAATAA 1329 0.4635 MGGKSSKRRSGREYPSFESSSFNHHGYSQSQPYEEAYPAQPYHTPQHHSPPPPRYYSGAQTPHRHPQLDRRYSRIADNYNSLDQVTAALAQAGLESSNLIVGIDFTKSNEWTGSRSFNRKSLHHIGRGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDIFSFYQDERPCNGFEEVLMRYRELVPSLRLAGPTSFAPIIEMASTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVKASKYPLSIILVGVGDGPWDVMREFDDNIPARAFDNFQFVNFTEIMSKNVDSSRTQTEFALAALMEIPSQYKATIDLNTLGVRRGNAPTRVALPPPQYGTPSFSSSSKPYHSNSFQKSAESYPEYEAAVSTGPSSNSLYDNKVCPICLSNPKDMAFGCGHQTCCECGVDLNSCPICRSPIQTRIKLYQ* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0693 442 MobiDBLite consensus disorder prediction 15 35 - -
Vvi1g0693 442 SUPERFAMILY RING/U-box 391 437 - -
Vvi1g0693 442 Pfam Zinc finger, C3HC4 type (RING finger) 395 436 - -
Vvi1g0693 442 MobiDBLite consensus disorder prediction 1 66 - -
Vvi1g0693 442 MobiDBLite consensus disorder prediction 352 366 - -
Vvi1g0693 442 CDD RING-HC_RGLG_plant 394 441 IPR045317 GO:0061630|GO:0070534
Vvi1g0693 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 442 IPR013083 -
Vvi1g0693 442 MobiDBLite consensus disorder prediction 343 366 - -
Vvi1g0693 442 SUPERFAMILY vWA-like 97 280 IPR036465 -
Vvi1g0693 442 ProSiteProfiles Zinc finger RING-type profile. 398 431 IPR001841 -
Vvi1g0693 442 Pfam Copine 121 335 IPR010734 -
Vvi1g0693 442 SMART VWA_4 96 299 IPR002035 -
Vvi1g0693 442 PANTHER COPINE FAMILY PROTEIN 1 29 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0693 Vvi-Chr1 6977775 6982566 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0693 K16280 - vvi:100267987 904.82