Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0690 ATGTCTAAGGCAGTTGTAGATGTTCCTCCCAAGGGTGGGTTTAGCTTTGACCTATGTAGAAGGAATGAAATGTTGTCGAAAAAAGGTGTTCAGACTCCACCTTTTCGGAAGACAGGAACCACTATTGTTGGGCTAGTTTTCCAGGATGGTGTCATTCTTGGAGCAGATACAAGGGCCACTGAAGGACCCATAGTTTGTGATAAGAATTGTGAAAAAATTCATTATATGGCACCTAACATTTATTGCTGTGGAGCAGGAACTGCAGCTGATACAGAGGCAGTAACAGACATGGTTAGTTCCCAGCTGCAGTTACATCGTTATCATACTGGTCGAGAATCAAGGGTTGTGACAGCTCTTACCCTTCTGAAGTCTCATCTTTTTAGTTATCAAGGCTATGTTCAAGCTGCTTTGGTGCTTGGTGGAGTTGATTGCACTGGACCACATTTGCACACTATCTACCCCCATGGATCTACAGACACACTGCCCTTTGCCACAATGGGCTCTGGTTCTCTTGCTGCAATGGCCGTATTTGAGTCAAAGTATCATGAAGGGTTGACTAGGGAAGAGGGAATAAATTTAGTAAGCGAGGCTATTTGCTCTGGCATATTCAATGACTTGGGGAGTGGAAGCAATGTAGATGTTTGTGTAATAACCAAGGGCCATAAGGAGTACCTTAGAAACCACCAGCTGCCGAATCCTCGCACCTACGTGAGTGCAAAAGGATATTCATTTCCCAAGCCAATTGAGGTTCTCTTGACCAAGGTTACTCCACTGAAAGAAAAAGTTGAAGTGATTGAAGGGGGAGATGCAATGGAAGAGTGA 822 0.4428 MSKAVVDVPPKGGFSFDLCRRNEMLSKKGVQTPPFRKTGTTIVGLVFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFSYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYHEGLTREEGINLVSEAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHQLPNPRTYVSAKGYSFPKPIEVLLTKVTPLKEKVEVIEGGDAMEE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0690 273 FunFam Proteasome subunit beta type-2 40 272 - -
Vvi1g0690 273 Pfam Proteasome subunit 37 217 IPR001353 GO:0005839|GO:0051603
Vvi1g0690 273 CDD proteasome_beta_type_7 40 228 - -
Vvi1g0690 273 ProSiteProfiles Proteasome beta-type subunit profile. 39 217 IPR023333 -
Vvi1g0690 273 ProSitePatterns Proteasome beta-type subunits signature. 43 90 IPR016050 GO:0005839|GO:0051603
Vvi1g0690 273 PRINTS Proteasome component signature 203 214 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi1g0690 273 PRINTS Proteasome component signature 167 178 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi1g0690 273 PRINTS Proteasome component signature 178 189 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi1g0690 273 PRINTS Proteasome component signature 47 62 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi1g0690 273 PANTHER METALLOPROTEASE TLDD 28 235 IPR023333 -
Vvi1g0690 273 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 40 271 IPR029055 -
Vvi1g0690 273 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 12 232 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0690 Vvi-Chr1 6948649 6954573 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0690 K02739 - vvi:100249199 557.37