Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0688 ATGAACTTGCCTGAAACTGATAACGTCTTGCCACACTCATCATCGCCTTTGGAACAAGATATTCTGATAAAGAATATCCTTCTTACCCATGACCCTAATGGCTGTTTTCTTGATTCAGAGCTATTGCTTTGTGCTATGGAGAATATCATGTGTCATACTACATCAGAAATAAGAGTTCCTGGTCTATATTTTGATGCAATGGCAAGGAAAATTGTACGCGACATTGAAGTAGTTGGATCACAAGAGCCGCTGGGATTGATCATCCATAAAATCTCACGTGAGATACTCTGCAAATGCTCTGTGGAAGGGGATTCACATACAAGAACAATGGTCCTGTTCGATATGCTGAGGAATTATAGATGGGATGCAAAAGTGGTTCTAGTACTAGCAGCCTTTGCAACATGCTATGGTCAATTATGGCTGTTAATGCAGCCATGCCCTGTCAATCCCCTGGCAATATCAATTGCAATGCTTAAGCAGCTGCCTAGCAACTTCAGTGCATTGAGGCCGCGATTCAAGGCCTTGAACTTGCTGGCTAAGGCAATGGCTGATGTGGCCAAGTGTATAATCAAGTTTGAAAGCCTTCCAATCAAAGATGTAAAGCTGGATAAGGAGACAATGACTGTTACCAAGTCACAGATTTATTTATCTGCTTACTGGGTCATTAAAAGCACCTTGACATGCTCCTCTCAAATCAGAGACTTGACAGCCATGAAACTTGAGCAAATCATCCATAGATCAAACTTAGCATGCCATAAGCCTTTAATGTTCTCTGAATTCCATTTCAGGCATTCAAGTTCTATAACCGTTGCAGCATGGGAGCTCTTAAGCTTGGTGTATAAGTTGGGCAGAATATGCAGTCAGCTCAGATGGCAGGTGGATGTGTGTCATCAACAGATAGAGACAAAGTTGCATCAAAAGCTCTTGGATCTCTCTGAGGAGACCCAGGTCGACAATCAAGAGGTGCTTCACATGTTGTTTGCTTTAAGGGATGACACACCACTGATAGATTGCTCCTCTCAAAAGAAGCTTGGGGTCTCTGAACTGAAAAACAAGGTAGTCATATGCATTGTCTCAAAGCCAGAACCCCTCCCTATTGAGGAATTACTCTTCCTGGTTCAGCAGACATATGATCATCCCCACCACAATAAGTTAGAGAGAAGCTATGAAATTGTGTGGGTTCCCATTCCATCTTCTGATACATGGACTGAGGCAGAAGAGAGAAGCTTTGACTTTTTATGTTACTCTTTGCCATGGTACTCAGTTCGGCAACCATGGCTGCTTTGCTCTGAAGTGGTGACTTTTATAAAGCAAAAATGGAACTTCAAAGATGAGCCCATAATGGTAGTTTTGGATTCACAAGGGGAAGTTACAAACTCAAATGCAATAGATATGGCACTGATTTGGGGTGACAGGGCATATCCCTTTTCAGCTTCGGTAGAAAAGAAGCTTTGGGAAGAGGAGAAATGGAACCTGCAATTTATGATTGATGAAATCGATTCCCTACTGACCAAGTTGGTACATGAAGGCAGAAATCTATGCATTTATGGAAGCCAAAACCTGGACTGGATCAGGGAATTCAACTCTAAGATGAAAGAGATAACAAATGCAGGCTTGCAGCTGGAGATGGCCTATGTTGGGAAGAGAAATCCAAGTGAGCATGAAAGGAACATACTAGCCACCATTGATTTGGAAAAGCTGAGTGGTTCCCTCTCCTTCACAAAGATACATCTCTTCTGGCGTCGGTTGGAGAGTATGAGAAGATCAGTACTCCGACTTGGAAAGACGGCAAACACCGATCATATTCTAGGAGAGGTGGCAGCATTGCTAGACATGGATGATGAGAATGGCCAGGGTTGGGCAGTGATGGGGTCAGGGTCTTCAATGGAGATTGTAAGGCTTCATGGGGCAAGGCTCATGGACTGCTTAAACCTTTTCTCAGTATGGGGTAAAAATGTGGGAAAGCTGGGACTAGTAGGTGCAGTCAAGTCTGCCGTTGAGCCTCCTGCTCTTCCAGGGCATCGCTGTCAGTCCAGAGTCAGGCCATTTGCTGAAGGCTTAATAGACGAAACGGAAGTTTGTAATGAGTGTAAGCGCCCCATGGAGAAGTTTGTGCTTTACAAATGCGATACAAGAGAGTAG 2142 0.437 MNLPETDNVLPHSSSPLEQDILIKNILLTHDPNGCFLDSELLLCAMENIMCHTTSEIRVPGLYFDAMARKIVRDIEVVGSQEPLGLIIHKISREILCKCSVEGDSHTRTMVLFDMLRNYRWDAKVVLVLAAFATCYGQLWLLMQPCPVNPLAISIAMLKQLPSNFSALRPRFKALNLLAKAMADVAKCIIKFESLPIKDVKLDKETMTVTKSQIYLSAYWVIKSTLTCSSQIRDLTAMKLEQIIHRSNLACHKPLMFSEFHFRHSSSITVAAWELLSLVYKLGRICSQLRWQVDVCHQQIETKLHQKLLDLSEETQVDNQEVLHMLFALRDDTPLIDCSSQKKLGVSELKNKVVICIVSKPEPLPIEELLFLVQQTYDHPHHNKLERSYEIVWVPIPSSDTWTEAEERSFDFLCYSLPWYSVRQPWLLCSEVVTFIKQKWNFKDEPIMVVLDSQGEVTNSNAIDMALIWGDRAYPFSASVEKKLWEEEKWNLQFMIDEIDSLLTKLVHEGRNLCIYGSQNLDWIREFNSKMKEITNAGLQLEMAYVGKRNPSEHERNILATIDLEKLSGSLSFTKIHLFWRRLESMRRSVLRLGKTANTDHILGEVAALLDMDDENGQGWAVMGSGSSMEIVRLHGARLMDCLNLFSVWGKNVGKLGLVGAVKSAVEPPALPGHRCQSRVRPFAEGLIDETEVCNECKRPMEKFVLYKCDTRE* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0688 713 Pfam Sieve element occlusion C-terminus 480 710 IPR027944 -
Vvi1g0688 713 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 13 710 IPR039299 GO:0010088
Vvi1g0688 713 Pfam Sieve element occlusion N-terminus 18 315 IPR027942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0688 Vvi-Chr1 6925691 6929045 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0688 - - vvi:100255955 1373.22