Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0687 ATGGCAACCACATTCATCCCTGACAAGGTGCAACGAGTGCGACAAAGGAGCGGGGATCGGATGTTTGCATCGGATGACAATGGAATCATGAAACAAATTCATGCCATCCATGTTCCCGATGGCCGCGACTTTGATGTGAAACCTCTTCTTCGCATTGTTGAGAACATATTGCTCCGTACAACCTCTTCTACCACCCTCACTCCTGCCCTTCCTGGCATTCCTCTGGGATCAAATCAAGCGCAACTGGATGCTTTGGAGGATAAGACCCTCCAAGATGGCTCCAGCAACATGATTGATCTTTTGGCGCACACGATAAATAAAATCTCTTGCGAGATATCGTGCAAATGTACGAGTGGTGGAGATGCACATGCAACGGCTGTAGCAGTATTCAACATATTATCGAGCTACTCATGGGATGCTAAAGTGGTGCTAGCTTTGGCAGCATTTGCTACCACTTACGGAGAGTTTTGGTTGGTGGCCCACCTATACCCCACGAACCCACTGGCCAAATCAGTGGCCATTCTTAAACAATTGCCAGACATATTGGAGCATACGGATGCCTTGAAACCAAAGTTTGAGGCACTAAGCAGCCTTATCAAGGTTATGGTGGATGTGGCCAAGTGCATAGTTCAGTTCAAGGAGCTTCCACCCCAGTACATTACCCCTGACACTCCAGCGATGGTAACTGCCATTGCTCACATCCCCACAGCTGTTTACTGGACCATCCGCAGTATAGTGGCCTGCGCATCACAGATTGCGTCCCTCATTGGCATGAGCCACGAGTACATAGCCTCAACAATGGACGCTTGGGAGCTCTCAGGCTTGGCTCATAAGGTCAGCAACATGTATGGTCACCTCCAAAGCCAGCTATATCTTTGCCAGCAACACATAAACGATAAGAAACATATTGAAGCATATATGATGCTTGTACGGCTGTTCGAGACCCCCCACATTGATAACATGAAGATTATTAGGGTGTTGATTTATGCCAAGGATGACCAGCCGCCGCTATTTGATGGCCTCAGCAAGAGAAAGGTTAGCCTTGATATATTGAGGAGGAAGAATGTGTTGCTATTTATTTCAGAGCTTGAAGTTCCCCATGAAGAGCTTTTCATTCTGGATCAGATGTACCAAGAATCACGGCAGGATCCAACCAGACCAGAGAGTCAGTATGAGGTTGTGTGGATGCCAATGGTTGATCGATCCACTCCTTGGACAGAGGAAAAGAACAGGCAGTTCGAGACTCTAAAATCAATGATGCCATGGTACTCCGTGGATCATCCTTCATCGATCGACTTGGCAGTCATCAAGTACATCAAGGAGATGTGGGGCTTCAACAAAAAGCCTCTGCTAGTGGTGTTGGACCCACAGGGAAGAGTTGTCAACAACAATGCCATCCACATGATGTGGATCTGGGGCAGCCTGGCTTTCCCTTTCACTAGCCTGAGGGAGGAAGGACTCTGGAAGGGAGAGACATGGAGGATGGAGCTATTGGCAGACACCATTGACCCGATAATCCATAACTGGATCTCAGAAGGAAGTTACATTTGCCTGTTCGGAGGAGAGGATATGGAGTGGATCCGGAAATTCTGTATCCTTGCAAAGGCCATTGCAAGAGCTGCTGGCATCAGGCTAGAGATGCTTTACGTGGGAAAGAGCAACCCCAGAGAGAAAATTCAGAAGATTAATGCAATCATTTCTACGGATAACCTGAGCCACACATTGCCAGACCTACATCTAGTATGGTTCTTTTGGGTCAGGCTAGAGAGCATGTGGTACTCTAAGATGCAGCATGGCAAGACCGTAGAGAGCGACCCCATAATGCAGGAAATTGTGTCAATGCTTAGCTTTGACGGCAGCGACCAAGGATGGGTTGTATTCAGTAAAGGATCAGGCGAGATGACTAAGGCAAAGGGTGAGAATATTGTGAGATGCTTGAGCGACTATGATGTTTGGAAGAATAATGTATCAAGTAAAGGGTTTTTGGGTGCATTGAATGACTACCTCCGTGAGATCCACACCCCACACCACTGCAACCGTCTAATACTGCCAGGAACCACAGGCAGCATTCCGGAGAGGGTGGTCTGTGCTGAATGCGGGCGTCCAATGGAGAAGTTCGTTATGTATCGCTGCTGCACGGATTAA 2145 0.4783 MATTFIPDKVQRVRQRSGDRMFASDDNGIMKQIHAIHVPDGRDFDVKPLLRIVENILLRTTSSTTLTPALPGIPLGSNQAQLDALEDKTLQDGSSNMIDLLAHTINKISCEISCKCTSGGDAHATAVAVFNILSSYSWDAKVVLALAAFATTYGEFWLVAHLYPTNPLAKSVAILKQLPDILEHTDALKPKFEALSSLIKVMVDVAKCIVQFKELPPQYITPDTPAMVTAIAHIPTAVYWTIRSIVACASQIASLIGMSHEYIASTMDAWELSGLAHKVSNMYGHLQSQLYLCQQHINDKKHIEAYMMLVRLFETPHIDNMKIIRVLIYAKDDQPPLFDGLSKRKVSLDILRRKNVLLFISELEVPHEELFILDQMYQESRQDPTRPESQYEVVWMPMVDRSTPWTEEKNRQFETLKSMMPWYSVDHPSSIDLAVIKYIKEMWGFNKKPLLVVLDPQGRVVNNNAIHMMWIWGSLAFPFTSLREEGLWKGETWRMELLADTIDPIIHNWISEGSYICLFGGEDMEWIRKFCILAKAIARAAGIRLEMLYVGKSNPREKIQKINAIISTDNLSHTLPDLHLVWFFWVRLESMWYSKMQHGKTVESDPIMQEIVSMLSFDGSDQGWVVFSKGSGEMTKAKGENIVRCLSDYDVWKNNVSSKGFLGALNDYLREIHTPHHCNRLILPGTTGSIPERVVCAECGRPMEKFVMYRCCTD* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0687 714 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 8 714 IPR039299 GO:0010088
Vvi1g0687 714 Pfam Sieve element occlusion N-terminus 24 317 IPR027942 -
Vvi1g0687 714 Pfam Sieve element occlusion C-terminus 483 713 IPR027944 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0687 Vvi-Chr1 6912016 6915565 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0687 - - vvi:100261038 1448.34