Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0686 ATGGCAAACACGACCATCTCTGCCCAGATGCAGCAAAGCGTGAGTAACCGATTAATGTCAGCATCACTGATTGACAATCCAATCATGAATCAAATTCATTCCATCCATGCTTCAGATGGCTGCAGCCGCCACATTGACATGAAACCTCTTCTCCGCTTCACTGAGAACATCTTGCAAAATGCTCTGCCTACCACCATCGACACCCCTGCCACTCCTCAGGAAGCTCAAACACAACTCAATGAATTACTGGAGGATTACGACGGCCACTATGACTTCCTCAAGCTCTATCTCGCACAAATCATAAAGAGAACCTCCTGCAAGATATCATGCACGTGCGGTCAAAGTGCATATGCAGCGACCTTGGAGGTATTCAAGACACTTTCATCCTTCACCTGGGAGACCAAGGTGGTGCTTGCCCTAGCAGCTTTCTCTGTGACCTATGGTAAGTTTTGGCTGGTTGCCCAGCCATCTTCCACCAACTTACTCGCCAAATCAATTGCCATCCTTGAGCAATTACCAGACATGTTGGCGGATAAGGAGCCTTGGAAGCCAAAGTTTGAAGCGCCTAGCAACCTTATCAAGACAATTCTGAAAGTGACCAAGTGCGTAGTTGAGTTCTGGGAGCTTCTATCAGAATACATGACTGACGGGCGAGGAATGCCAACCGCGGCTGCTCATATTCCCACAGCTGTCTATTGGACCATCCATGGTATGGTGGTCTGCACAAAAAGAACCATGTGCCTTACAGACATGGGCCAAGAGGATATAGACCAAACAATGGAGGATTGGTACCTGTCCAGCTTGGACCACAAGCTCAGCCAGATACATGATTACCTTAAAGAGCAACTAGCTGTTTGCCGTCAACACATTCGTGAAAGGAGAGAGATTGAGGCATATAAAATGATTGAGCACCTCCTCAAGACTCCCCAAATTGATAACATGAAGATTCTTGGGGCTTTGATTTGCGCCAAGGCAGAGCAGCTGCCCCTATTTGATGGTTTAAACAAGAAAAGGGCTAGACTCGACGTACTGTGGAAGAAGAATGTGTTGCTATTCATTTCAGAGCTTGAAGTTCCCTACCAGGAGCTTTCCATTCTGGAAAAGATGTACCTAGAGTCAAGGCAGGATCCAACCAAAGAAGAGAGCCAGTACGAGGTCGTGTGGCTTCCAGTGGTTGATGGATCCACCCCACGGAATGAAGAGAAGGACAGGCATTTTGAGACTCAAAAAGCATTGATGACATGGTACGCTGTTTTTCACCCTTCACTGCTGGAAACAGCAGCCATCAAGTACATCAAGGAGGTGTGGGGCTTCAACAAGAGGCCGATGCTAGTGGCATTGGACCCAATGGGAAGAGTCGTCAACCCTAACGCTATCCACATGATTTACATTTGGGGCCCTACTGTTGCCTTCCCTTTCTCCAAGTCCAGGGAGGAAGGACTCTGGAAGGAAGTAACATGGGGCATTGAGCTACTGGCAGCCGCCATCCACCCAATGATAGTCGACTGGATCTCTGAAGGCAAATACATTTGCTTGTATGGAGGAGACGATATAGAGTGGATCCAGAGATTCACTGACGTTGCAAAAGCTGTTGAAAGCGCTGCAGATATCAAGTTGGAAATGCTCTATGTGGGCAAGAGCAACCTTAGGGAGAAAGTTCGGAAGAACAATGACAGCATTGCCCAGGAAAACCTGAGCCATGTACTGCCAGACCTAAGTTCAGTATGGTTCTTCTGGGCCCGGCTAGAAAGCATGTGGCACTCCAAGGTGCAGCATGGGGGGGAGAATGCAGAGAGAGATCCTATAATGCAGGAAATCGTGTCAATGCTTAGCTTTGACGGTGGGGATCATGGATGGGCTGTTTTCGGCAGGGGGTGGGGGGAGATGAGTCAGATGACTAAAGCAAAGGGCGACACTATTGTGGGATGCTTGAGGGACTATCACGTGTGGAAAAATAACATAGCAACCAAAGGCTTCGTGGGTGCCGTCAATGACTACCTCCCCCAGCTTCACACCCCACACCACTGCAACCGTCTCGTCCTGCCAGGAACCACCGGCAGGACCCCGGATAGGGTAGCTTGCGCAGAGTGTGGCCGTCCTATGGAGAAATTTATCATGTATCGCTGCTGCACTGATTGA 2139 0.4895 MANTTISAQMQQSVSNRLMSASLIDNPIMNQIHSIHASDGCSRHIDMKPLLRFTENILQNALPTTIDTPATPQEAQTQLNELLEDYDGHYDFLKLYLAQIIKRTSCKISCTCGQSAYAATLEVFKTLSSFTWETKVVLALAAFSVTYGKFWLVAQPSSTNLLAKSIAILEQLPDMLADKEPWKPKFEAPSNLIKTILKVTKCVVEFWELLSEYMTDGRGMPTAAAHIPTAVYWTIHGMVVCTKRTMCLTDMGQEDIDQTMEDWYLSSLDHKLSQIHDYLKEQLAVCRQHIRERREIEAYKMIEHLLKTPQIDNMKILGALICAKAEQLPLFDGLNKKRARLDVLWKKNVLLFISELEVPYQELSILEKMYLESRQDPTKEESQYEVVWLPVVDGSTPRNEEKDRHFETQKALMTWYAVFHPSLLETAAIKYIKEVWGFNKRPMLVALDPMGRVVNPNAIHMIYIWGPTVAFPFSKSREEGLWKEVTWGIELLAAAIHPMIVDWISEGKYICLYGGDDIEWIQRFTDVAKAVESAADIKLEMLYVGKSNLREKVRKNNDSIAQENLSHVLPDLSSVWFFWARLESMWHSKVQHGGENAERDPIMQEIVSMLSFDGGDHGWAVFGRGWGEMSQMTKAKGDTIVGCLRDYHVWKNNIATKGFVGAVNDYLPQLHTPHHCNRLVLPGTTGRTPDRVACAECGRPMEKFIMYRCCTD* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0686 712 Pfam Sieve element occlusion N-terminus 25 309 IPR027942 -
Vvi1g0686 712 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 1 712 IPR039299 GO:0010088
Vvi1g0686 712 Pfam Sieve element occlusion C-terminus 476 711 IPR027944 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0686 Vvi-Chr1 6907733 6911179 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0686 - - vvi:100266247 1464.9