Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0684 ATGAGGGTCCGATCATGTCTACCCGCCTGGATCTCCACTGCCGATGACTCTGAGATTTCTCTTCCAGAAATCCAAAAATCGTTCCCCAAACTCTTCGCCTCCGATAATAGCAGGTCCCCTGAAATGTTGGGCAGCTTGTCGACCTCCGGAGAGACCAGCTGCGATAGTGGCCTCCAAAGCAGTCTTTCTCTCCAAACCCTGCCATCTGTTCCCTCACTCCAAAAACTCTCACCCGAAGCCCTAAACCTCTCCGTCTCTCACCTCTGCGTCGCCACTCTTAAGCCCCGCCCTGTCCACATCAATTGCCTTGCCGTCTCCGCCGACAGCCTCTATGCAGCTTCCGGCTATCAAATCCACGTCTTCGATTTGAAAAACTACGCTCACTTGGATGCATTTAACACTGATGATTCCTCTTCTGGCTCAGTGAAGTCCCTCGCTTTCTGCGACGGAAAAATTTTCACTTCTCACCAGAACGGCAAGATCCGAGTCTGGCAAATGACCATCAGTAAACGGCACCAGCTAGTGGCCACTCTCCCCACTGTTAATGACCGGTTACGACACTTCATGCTTCCGAAGAACTACGTAAGTGTCCGACGTCACAAGAAACGGCTCTGGATTGATCACGCTGACGCCGTTTCCGGCCTTTCTGTTTCAGACGGTTTCATCTGTTCCGTTTCTTGGGACAAGTGCTTCAAGATATGGCGAGCCTCCGATCTCCGCTGCCTGGAGTCTGTCAAGGCGCACCAAGACGCCGTTAACGCCGTCGCCATCTCCGGTAACGGAATTATATACACAGGATCGGCAGATTGCCGGATTAAGGTCTGGGCCAAAGCGTCAGGGGAGAAACGGCACACTGTGGTAGCCACCCTAGAGAAGCACAAATCGGCCGTCAATGCTTTAGCATTGACCGGCGACGGTTCGATCCTATTTTCGGGGGCTTGTGACCGTTCCATTCTGGTGTGGGAGAGGGAAGACAGCGCGAATCACATGGTGGTTACGGGGGCGTTGAGAGGGCACAGTAAGGCCATATTGTGCTTGATCAGCGTCTCTGATCTGCTCTTGAGTGGATCAGCTGATCGAACGGTCAGAATATGGCAACATGGAAGTGACGGACGTTACTGTTGCCTGAGCGTTTTGGAAGGACACGAGAAACCTGTGAAGGCGTTGGTGGCGGTTTCCGATGGGGAATCGAAGGTGGCCGGTGCAATCAGGGTATTTAGTGGCAGCCTTGACGGTGAGATTAAGGTGTGGCAGGTATCCGTTTCTAGTCACTATGGTCCCTTGACCCCGATTTTCTGA 1299 0.5289 MRVRSCLPAWISTADDSEISLPEIQKSFPKLFASDNSRSPEMLGSLSTSGETSCDSGLQSSLSLQTLPSVPSLQKLSPEALNLSVSHLCVATLKPRPVHINCLAVSADSLYAASGYQIHVFDLKNYAHLDAFNTDDSSSGSVKSLAFCDGKIFTSHQNGKIRVWQMTISKRHQLVATLPTVNDRLRHFMLPKNYVSVRRHKKRLWIDHADAVSGLSVSDGFICSVSWDKCFKIWRASDLRCLESVKAHQDAVNAVAISGNGIIYTGSADCRIKVWAKASGEKRHTVVATLEKHKSAVNALALTGDGSILFSGACDRSILVWEREDSANHMVVTGALRGHSKAILCLISVSDLLLSGSADRTVRIWQHGSDGRYCCLSVLEGHEKPVKALVAVSDGESKVAGAIRVFSGSLDGEIKVWQVSVSSHYGPLTPIF* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0684 432 Pfam WD domain, G-beta repeat 287 321 IPR001680 GO:0005515
Vvi1g0684 432 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Vvi1g0684 432 Pfam WD domain, G-beta repeat 374 417 IPR001680 GO:0005515
Vvi1g0684 432 Pfam WD domain, G-beta repeat 335 365 IPR001680 GO:0005515
Vvi1g0684 432 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Vvi1g0684 432 PRINTS G protein beta WD-40 repeat signature 309 323 IPR020472 -
Vvi1g0684 432 PRINTS G protein beta WD-40 repeat signature 405 419 IPR020472 -
Vvi1g0684 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 322 - -
Vvi1g0684 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 331 IPR001680 GO:0005515
Vvi1g0684 432 Gene3D - 195 329 IPR015943 GO:0005515
Vvi1g0684 432 SMART WD40_4 329 366 IPR001680 GO:0005515
Vvi1g0684 432 SMART WD40_4 283 322 IPR001680 GO:0005515
Vvi1g0684 432 SMART WD40_4 238 276 IPR001680 GO:0005515
Vvi1g0684 432 SMART WD40_4 198 235 IPR001680 GO:0005515
Vvi1g0684 432 SMART WD40_4 86 122 IPR001680 GO:0005515
Vvi1g0684 432 SMART WD40_4 128 165 IPR001680 GO:0005515
Vvi1g0684 432 SMART WD40_4 372 418 IPR001680 GO:0005515
Vvi1g0684 432 Gene3D - 81 194 IPR015943 GO:0005515
Vvi1g0684 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 366 - -
Vvi1g0684 432 FunFam BnaA09g28200D protein 195 280 - -
Vvi1g0684 432 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 53 421 IPR045182 -
Vvi1g0684 432 CDD WD40 89 418 - -
Vvi1g0684 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 285 IPR001680 GO:0005515
Vvi1g0684 432 Gene3D - 330 428 IPR015943 GO:0005515
Vvi1g0684 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 275 - -
Vvi1g0684 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 366 IPR001680 GO:0005515
Vvi1g0684 432 SUPERFAMILY WD40 repeat-like 88 420 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0684 Vvi-Chr1 6886601 6887899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0684 142 421 Acyl Lipid Metabolism Gene Families AT3G18860 24.468 4.38e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0684 - - vvi:100249075 842.032