Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0683 ATGTTGAATTACCAGCATTTCATATTCTTCATACTGCACCTGTGTGCATTCATTTTTGCAGAAGGAATTTGCTGGACAAGAACATCAGAGAGGCAGACATCCCGCATGAGAATGGAATACCTAAAGTCAGTCCTCAGGCAAGAAGTTGGTTTCTTTGACAAACAAGCTGCTTCTTCTACTACCTTCCAAGTCATATCCACCATCTCTTCTGATGCGCATTCAATCCAAGATGTTATATCTGAGAAGATACCCAACTGCTTGGCTCACCTCTCATCATTCATCTTCTGCCTCATAGTTGCCTTCTTTCTTTCTTGGCGATTGGCAGTTGCTGCTCTTCCGTTCTCGCTAATGTTCATCATTCCAGGGGTAGGATTTGGAAAGCTAATGATGAACCTGGGGATGAAGATGAAGGTAGCTTATGGGGTTGCAGGTGAGATTGCAGAGCAAGCAATCTCATCAGTCCGAACAGTTTATTCTTATGCGGGGGAGTGTCAAACTCTAGACAGGTTCAGCCATGCCCTTCAAAAAAGTATGAAGCTTGGCATAAAGCTAGGATTCACAAAGGGGCTGTTGATAGGAAGTATGGGAACGATTTATGCAGCTTGGGCTTTTCAGGCTTGGGTTGGGACTATTCTTGTTACTGAGAAAGGAGAGGGAGGTGGCTCTGTTTTCATTTCTGGAGTCTGCGTCATCCTGGGAGGACTGTCTATTATGAATGCACTCCCAAATCTCTCTTTCATCTTAGAGGCAACAGCTGCAGCCACCCGAATTTTTGAGATCACTGACCGGATTCCAGAAATAGACTCTGAAAATGAAAAAGGGAAAATTCTTGCATATGTGAGAGGAGAAATTGAATTTAAAGAGGTTGAATTCAGTTACCCATCAAGACCCACTACCAAGATTCTTCAAGGGTTCAATCTTAAAGTGAAAGCTGGTAAAACAGTAGGCCTTGTTGGAGGTAGTGGTTCGGGCAAATCCACAATCATTTCCTTGCTTGAAAGATTCTATGACCCTGTCAAAGGAAATATTCTCCTGGACGGACACAAAATAAAGAGGCTTCAGCTTAAGTGGTTGAGATCTCAAATAGGTCTGGTCAATCAAGAACCAGTCCTCTTCGCCACATCCATAAAGGAGAATATTCTGTTTGGCAAAGAAGGAGCTCCATTGGAACTTGTTGTAAGAGCAGCTAAGGCAGCAAATGCCCATGGTTTCATCTCCAAATTGCCTCAAGGATATGAAACTCAAGTTGGGCAATTTGGAATTCAGTTGTCTGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTAATAAGAGACCCAAGAATCCTTCTTCTTGATGAAGCTACAAGCGCTTTGGATGCAGAGTCTGAAAGAATAGTACAGGAAGCACTGGATCAAGCTTCCTTAGGAAGGACAACAATCATGATTGCCCATCGCCTCTCGACGATCCATAAGGCCGACATAATAGTGGTTCTTCAATCAGGAAGAGTGGTTGAATCGGGTTCTCACAATGATCTGATCCAGATGAACAATGGACAAGGAGGGGCCTATAGCAGAATGTTGCAATTGCAGCAATCAGCTATGCAAAGTAACTCCAGTTTCTATCGTCCAGCGGATGGCACAAGCCATAGCAGAACGATGAGTGCCCAGACTCCGGTAAGTGTGACCTCAAGCTTGCCAAGCAGTCCAGCTTTCCTCTTTAGCCCAGCATTTTCCATTAGCATGGCACCCTCCATCCAACTGCATTCCTACGATGAAAGTGACAGTGAAAACCTGGAGAAATCTTCTTACCCTCCTTGGCAATGGCGTTTGGTGAAAATGAATTTACCAGAGTGGAAGAGAGGCTTGATTGGGTGTATAGGGGCTGCAGTCTTTGGAGCAATTCAGCCAACCCATGCCTATTGCTTGGGAACAGTTGTCTCAGTCTACTTCCTAAAAGACGATTCATCCATCAAATCACAAACCAAATTCTATTGCTTCATCTTCTTAGGCCTGGCGGTTCTCAGCTTCATAGCAAATCTCCTCCAACATTACAATTTTGCAATCATGGGAGAGCGTTTAATTAAAAGAGTGCGGGAGAAGATGCTTGGAAAGGTTCTTACATTTGAGATTGGGTGGTTCGATCAAGATGAGAATACAAGTGCAGCCATCTGTGCACGGTTAGCCACTGAAGCCAACATGGTTCGGTCGCTGATTGGAGATCGTATATCATTGCTGGTTCAGGTTTTCTTCAGTGCTTCTCTCGCTTTTATGGTTGGATTAATAGTCACATGGAGATTAGCTATTGTAATGATAGCCATGCAGCCTCTACTCATTGGGAGCTTCTATTCGAAGAGTGTTCTGATGAAGAGTATGTCTGAAAAGGCCCTGAAAGCACAAAATGAAGGAAGCCAACTAGCAAGTGAAGCAGCTGTTAACCACAGGACCATCACTGCCTTTTCCTCTCAGCAAAGAATATTGGGTCTGTTTGGAGCCACAATGGAAGGCCCCAAGAAGGAGAATATCAAACAGTCATGGATTTCAGGCTTTGGTCTCTTCAGCTCACAGTTTCTGACAACAGCCTCTATAGCTTTGACTTACTGGTATGGAGGGAGGCTAATGATTCATGGATTAATAACCCCAAAGCACCTGTTTCAAGCTTTCTTCATCCTGATGAGCACCGGTAAGAACATTGCAGATGCAGGAAGCATGACTTCTGATTTGGCCAAAGGGAGCAGGGCCATGAGATCTGTTTTTGCAATCCTAGACAGGCAAAGTAAGATTGAACCTGAAGATCCAGAAAGAATCATGGTTAACAAGGCAATTAAGGGCTGCATAGAACTCAAGAACGTATTCTTCTCATACCCAACAAGGCCTGACCAAATGATCTTCAAGGGGCTCTCTCTCAGAATTGAAGCTGGTAAAACAGCTGCACTTGTGGGAGAGAGTGGTTCAGGAAAATCCACTGTCATTGGGCTGATTGAGAGGTTCTATGACCCACTCAACGGATCAGTACAGATAGATCAACATGACATCAGGAGCTATAATTTGAGAAAACTGAGGTCACATATTGCCTTGGTGAGTCAGGAGCCCATTCTCTTTGCAGGAACCATCTATGAGAACATTGTTTATGGGAAAGAGAATGCTACAGAAGCTGAAATAAGGAGGGCTGCACTTCTTGCTAATGCTCACGAATTTATAAGTTCTATGAAAGATGGATACAAAACTTACTGTGGAGAAAGAGGAGTCCAGCTATCAGGGGGCCAGAAGCAAAGGATAGCACTCGCTCGAGCAATATTGAAGAACCCGGCAATCATTCTTTTAGACGAGGCAACCAGTGCCCTTGACAGTATGTCAGAAAATCTAGTTCAAGAAGCTCTGGAGAAGATGATGGTTGGCAGGACTTGTGTAGTTGTAGCTCACCGGTTATCCACAATACAGAAGTCGGACACCATAGCTGTGATAAAGAATGGGAAGGTTGTGGAACAAGGCTCCCATTCTGATCTACTTGCTGTTGGACATGGCGGGACTTACTACTCTTTAATAAAGCTACAGGGCAATCATTCTCCTTATCGGTGA 3561 0.442 MLNYQHFIFFILHLCAFIFAEGICWTRTSERQTSRMRMEYLKSVLRQEVGFFDKQAASSTTFQVISTISSDAHSIQDVISEKIPNCLAHLSSFIFCLIVAFFLSWRLAVAALPFSLMFIIPGVGFGKLMMNLGMKMKVAYGVAGEIAEQAISSVRTVYSYAGECQTLDRFSHALQKSMKLGIKLGFTKGLLIGSMGTIYAAWAFQAWVGTILVTEKGEGGGSVFISGVCVILGGLSIMNALPNLSFILEATAAATRIFEITDRIPEIDSENEKGKILAYVRGEIEFKEVEFSYPSRPTTKILQGFNLKVKAGKTVGLVGGSGSGKSTIISLLERFYDPVKGNILLDGHKIKRLQLKWLRSQIGLVNQEPVLFATSIKENILFGKEGAPLELVVRAAKAANAHGFISKLPQGYETQVGQFGIQLSGGQKQRIAIARALIRDPRILLLDEATSALDAESERIVQEALDQASLGRTTIMIAHRLSTIHKADIIVVLQSGRVVESGSHNDLIQMNNGQGGAYSRMLQLQQSAMQSNSSFYRPADGTSHSRTMSAQTPVSVTSSLPSSPAFLFSPAFSISMAPSIQLHSYDESDSENLEKSSYPPWQWRLVKMNLPEWKRGLIGCIGAAVFGAIQPTHAYCLGTVVSVYFLKDDSSIKSQTKFYCFIFLGLAVLSFIANLLQHYNFAIMGERLIKRVREKMLGKVLTFEIGWFDQDENTSAAICARLATEANMVRSLIGDRISLLVQVFFSASLAFMVGLIVTWRLAIVMIAMQPLLIGSFYSKSVLMKSMSEKALKAQNEGSQLASEAAVNHRTITAFSSQQRILGLFGATMEGPKKENIKQSWISGFGLFSSQFLTTASIALTYWYGGRLMIHGLITPKHLFQAFFILMSTGKNIADAGSMTSDLAKGSRAMRSVFAILDRQSKIEPEDPERIMVNKAIKGCIELKNVFFSYPTRPDQMIFKGLSLRIEAGKTAALVGESGSGKSTVIGLIERFYDPLNGSVQIDQHDIRSYNLRKLRSHIALVSQEPILFAGTIYENIVYGKENATEAEIRRAALLANAHEFISSMKDGYKTYCGERGVQLSGGQKQRIALARAILKNPAIILLDEATSALDSMSENLVQEALEKMMVGRTCVVVAHRLSTIQKSDTIAVIKNGKVVEQGSHSDLLAVGHGGTYYSLIKLQGNHSPYR* 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0683 1186 SMART AAA_5 967 1153 IPR003593 GO:0016887
Vvi1g0683 1186 SMART AAA_5 311 497 IPR003593 GO:0016887
Vvi1g0683 1186 Gene3D ABC transporter type 1, transmembrane domain 750 937 IPR036640 GO:0005524|GO:0016020
Vvi1g0683 1186 Pfam ABC transporter 959 1107 IPR003439 GO:0005524
Vvi1g0683 1186 Pfam ABC transporter 302 451 IPR003439 GO:0005524
Vvi1g0683 1186 CDD ABC_6TM_Pgp_ABCB1_D1_like 7 257 - -
Vvi1g0683 1186 CDD ABC_MTABC3_MDL1_MDL2 940 1179 - -
Vvi1g0683 1186 FunFam Putative ABC transporter B family member 8 582 927 - -
Vvi1g0683 1186 Gene3D - 274 526 IPR027417 -
Vvi1g0683 1186 ProSitePatterns ABC transporters family signature. 1079 1093 IPR017871 GO:0005524|GO:0016887
Vvi1g0683 1186 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 16 249 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi1g0683 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 525 IPR027417 -
Vvi1g0683 1186 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 284 520 IPR003439 GO:0005524
Vvi1g0683 1186 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 617 904 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi1g0683 1186 Pfam ABC transporter transmembrane region 7 216 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi1g0683 1186 Pfam ABC transporter transmembrane region 618 888 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi1g0683 1186 Gene3D - 938 1180 IPR027417 -
Vvi1g0683 1186 ProSitePatterns ABC transporters family signature. 423 437 IPR017871 GO:0005524|GO:0016887
Vvi1g0683 1186 SUPERFAMILY ABC transporter transmembrane region 603 924 IPR036640 GO:0005524|GO:0016020
Vvi1g0683 1186 FunFam ABC transporter B family member 19 274 526 - -
Vvi1g0683 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 931 1179 IPR027417 -
Vvi1g0683 1186 CDD ABC_MTABC3_MDL1_MDL2 284 525 - -
Vvi1g0683 1186 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 940 1176 IPR003439 GO:0005524
Vvi1g0683 1186 PANTHER ABC TRANSPORTER B FAMILY 10 674 IPR039421 -
Vvi1g0683 1186 CDD ABC_6TM_Pgp_ABCB1_D2_like 607 922 - -
Vvi1g0683 1186 SUPERFAMILY ABC transporter transmembrane region 7 266 IPR036640 GO:0005524|GO:0016020
Vvi1g0683 1186 Gene3D ABC transporter type 1, transmembrane domain 7 592 IPR036640 GO:0005524|GO:0016020
Vvi1g0683 1186 FunFam ABC transporter B family member 4 931 1183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0683 Vvi-Chr1 6879857 6883938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0683 25 526 Calmodulin-binding Proteins AT2G36910 38.835 5.32e-103 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0683 K05658 - vvi:100254183 1798.48