Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0680 ATGGGAGAGACGGGGACCTCTAGGTTTCTGGGAAACTTAGACCCAAGTGCGCAGGAGTTCAGGCCGAGGAACCCATATATCCAGAACCAGATGAGCTTGTCTGTACCAACCCAAATTTACTATCCATACACACATCCACACCCACAATTTGTAGCTTCATCGGCGTACGTGAGACCTATCGCCGGAAAGCCGCCTCTCTCTCCGCTGATGTCGCCTTTGTCGGCAACACCTACTAGGGCGCTACTATTGAGTTCGGTGCCGACGGACGTGAGCGAGGTGACAGTGAGAAGAGAATTGGAGGCCTTTGGAGAGGTGAGGTCAGTGCAGATCGAGAGAGTGTGTGATGGAATTGTGGCTGTTAGTTTCTATGATCTAAGGCATGCACAAGCGTGTTTGACGGAGGTACGAGAACAACACATGCAACAACAAAGTAGGCTGAAGAAGCACTACGATTCCTTGTTAACACGAAAATTAGCTTCTCAAGTGGAGCATTTGCTTGTCCCACTACCACCGCCGGCACGTGGGCTTATTGCAGGTCGTGCAGTTTGGGCTCAATTCATGATTCCAGTGAGCACTTGCATGCTGGACGACTATAATCAAGGAACTCTTGTGATTTTCAATTTGGACTCAGAGGTCTCCACCAGCAGTCTGAGGGACATATTCGAGACATTTGGGTCAATAAAGGAATTGAGAGAGACACCATTAAAGCGGCACCAGAGGTTTGTGGAGTTTTTTGATATCAGAGATGCAGCTAGGGCTCTTAGAGAAATGAATGGCAAGAAAATTCAAGGGAAACGTGTGGTAATAGAATTTAGTCGGCCAGGTGGTCATGGCTGGAGGTTCTTCAATGCCATTAGTACTACCGCCCTATCAAGTACTTACTCTACCACCAATTCAACTGTAATCTCCCCCTCAAGACTAGCTTACCACACAGTCACTTCGAGATGCCCACCAGCATTGCCTTGTAAACTACCAGAGAAAAGCTCACATTTCAATGTGCCTCCTCATTCTTATCTCTCTCAAACACATCATTCCACAAAAAAGTCCAATGTTGGTATAAACAAAAGGAGTTCAAATGCTGGGAACATTAAAGCTTCAATGACATCACTTCGTTTGACTGGTTCAGTTGTTAATGGAATTGAAGATTCTAAAGGAGTTCATAGGTGGAATCCAAAGAAGAGCCCAAACGGTTCCTCAACAACAGAACAACAACAACAACAAGCTCAAAGAAATCGGCCGTGGAAGGGAAGACAGAAGAACATCGATTCCTGTTTTCTAATAAACGAGGATGCCAAAACGGAATCCCATTACAGAGATTCCAGAACAACTGTCATGATCAAGAACATACCCAACAAGTACAGTCAGAAGCTCCTAATGAACATGTTGGATAATCACTGCATTGACTGCAATAAGCAGGTTCCCGACGGAGGGGACCAACCATTGTCCTCCTATGATTTCATATACCTCCCCATCGATTTCAACAACAAGTGCAATGTGGGATATGGGTTCGTGAACATGACGTCCCCTCAGGCGACATGGAGGCTCTACAAGGCCTTTCATCTTCAATCTTGGAAGGTTTTCAACTCCACCAAAATCTGTGAAGTTACTTATGCTCGAATCCAGGGTTTGGAAGCATTGAAAGAGCACTTCAAGAACTCAAAGTTCCTGTGCGACACGAAGACATACCTACCAGTGGTGTTTTCACCGCCTCGAGATGGGAGACAACTGACAGAGCCTCAACCCATTGTTGGCAACAATAAGCTCATCATCGGTATCATCACCAATGACACTAAAGCTTCTGATGACAACGATGATGGTGATGAATGGGAGATGATGATGGACGGTCCTCATAGGCTGAATAATGGTGGTCACGTCCGCGATTATGATGATGATGTTGAGGATTACAATGACCACAATCAAAGTCCAAACGATGACGATAGTGGCGATGATGATGATAGCACTAGTGTTAGTGCCTAA 1977 0.4568 MGETGTSRFLGNLDPSAQEFRPRNPYIQNQMSLSVPTQIYYPYTHPHPQFVASSAYVRPIAGKPPLSPLMSPLSATPTRALLLSSVPTDVSEVTVRRELEAFGEVRSVQIERVCDGIVAVSFYDLRHAQACLTEVREQHMQQQSRLKKHYDSLLTRKLASQVEHLLVPLPPPARGLIAGRAVWAQFMIPVSTCMLDDYNQGTLVIFNLDSEVSTSSLRDIFETFGSIKELRETPLKRHQRFVEFFDIRDAARALREMNGKKIQGKRVVIEFSRPGGHGWRFFNAISTTALSSTYSTTNSTVISPSRLAYHTVTSRCPPALPCKLPEKSSHFNVPPHSYLSQTHHSTKKSNVGINKRSSNAGNIKASMTSLRLTGSVVNGIEDSKGVHRWNPKKSPNGSSTTEQQQQQAQRNRPWKGRQKNIDSCFLINEDAKTESHYRDSRTTVMIKNIPNKYSQKLLMNMLDNHCIDCNKQVPDGGDQPLSSYDFIYLPIDFNNKCNVGYGFVNMTSPQATWRLYKAFHLQSWKVFNSTKICEVTYARIQGLEALKEHFKNSKFLCDTKTYLPVVFSPPRDGRQLTEPQPIVGNNKLIIGIITNDTKASDDNDDGDEWEMMMDGPHRLNNGGHVRDYDDDVEDYNDHNQSPNDDDSGDDDDSTSVSA* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0680 658 FunFam Terminal EAR1-like 1 393 547 - -
Vvi1g0680 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
Vvi1g0680 658 MobiDBLite consensus disorder prediction 334 362 - -
Vvi1g0680 658 MobiDBLite consensus disorder prediction 381 416 - -
Vvi1g0680 658 MobiDBLite consensus disorder prediction 1 22 - -
Vvi1g0680 658 MobiDBLite consensus disorder prediction 392 414 - -
Vvi1g0680 658 SUPERFAMILY RNA-binding domain, RBD 202 520 IPR035979 GO:0003676
Vvi1g0680 658 Gene3D - 389 543 IPR012677 -
Vvi1g0680 658 CDD RRM3_EAR1_like 441 542 IPR034458 -
Vvi1g0680 658 Gene3D - 75 162 IPR012677 -
Vvi1g0680 658 MobiDBLite consensus disorder prediction 610 643 - -
Vvi1g0680 658 PANTHER RNA RECOGNITION MOTIF-CONTAINING 438 568 - -
Vvi1g0680 658 SMART rrm1_1 80 147 IPR000504 GO:0003723
Vvi1g0680 658 SMART rrm1_1 202 270 IPR000504 GO:0003723
Vvi1g0680 658 Pfam RNA recognition motif 2 441 551 IPR007201 -
Vvi1g0680 658 MobiDBLite consensus disorder prediction 596 658 - -
Vvi1g0680 658 FunFam Protein MEI2-like 1 200 292 - -
Vvi1g0680 658 Gene3D - 197 278 IPR012677 -
Vvi1g0680 658 SUPERFAMILY RNA-binding domain, RBD 70 140 IPR035979 GO:0003676
Vvi1g0680 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0680 Vvi-Chr1 6863499 6866213 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0680 - - vvi:100242186 1263.83