Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0677 ATGAATCCGCTGTGCTGCATTGCTCCGGTTTCCATCGATCGGGACCGGGCCAACCCGGGTCCGTGTCAGTTAGGGCTGGAGAGTTCAGTGAAGAATGTTAACATCGGTTCCAAGCAGGGATTCTCAGCTCAAGTTTCGTCGATCAATGCTGAGTCGGATGCGGTGAGCCACGATGTTGAGGACGCTTTTCCGGAGGCCAGGGACGGGAAGGTGTTCGGTGCAGGTGGAGGCGTGGCTGGGATTCTCTACAAGTGGGTGAATTACGGCAAGGGTTGGAGGTCGAGGTGGTTCGTGCTTGAAGATGGGGTTCTTTCGTATTACAAGATTCATGGTCCGGACAAGATTTTGATGAGTCCAGCAAGGGAGAAGAGCTTGAAGGTAATTGGAGAGGATTCATTGAGGTGTATGAAGAAGAACAGTTGGAGTAATCATCACCGTCTTGCTGGGTCTGCGAAGCAGTGGAAGCCGTTTGGGGAGATTCATTTGAAGGTGTCCTCAATTCGTGCAAGCAAATCAGATGATAAAAGGCTGTCCATATTCACGGGAACAAAAACTCTTCACTTGCGTTGCATATCTAGGGAGGATAGATCTGCATGGATTGAGGCACTGCAGGCTGCTAAAGATCTTTTCCCTAGAGTTTTGACAAGCAGTGATTTTGCACCATCTGAAGATATTGTTGTTTCAACTGAGAAGCTACGTTTACGATTAGTGCAGGAAGGTGTTGGTGAGGTAGTCATTAAAGACTGCGAATCTATCATGCTTTCCGAACTCTCTGAGCTGCAAAATCAGTTTAAGGCTCTTCAACGGAAGCATATTATCCTGCTAGATACATTGAGACAGTTGGAGACAGAGAAAATAGAACTGGAAACTACTGTAGTGGATGAAACAAAGGAACGGGAGTCATACTGTGGCCAAGGAAATAGAAGATTCAGTGACTTCTATTCTATCATGTCAGAGGGCAGTGGAAGTGATTCTGATGCAGATAATGAAAGTCAGGATGGAGTAGATGTTGAAACTGATGAAGATGATATAGTATTTTTCGACACAAATGATTTTTTGTCTTCAGAATCTCTTAGAAGTGCTTCTTACAGGAGCAGAGAAACCTTGGGAAATGGGACTTTGATAAATAATAGAGATCCTTTCCTTTCTGATCATTTGCATGATGAGATGGAGATCAGGACAGTTGAATATCCATACATCAAAAGAAGGGATAGTTTGCCAGAACCAAAGGAGAAAGAGAAGCCAGTCGGTCTATGGTCAATAATCAAGGATAATATTGGAAAGGACCTGTCTGGAGTTTGTCTCCCTGTTTACTTCAATGAACCACTTTCTTCATTGCAGAAGTGCTTTGAAGATTTGGAGTATTCCTACTTGGTTGATCGAGCAATGGAATGGGGAAAGCAGGGAAATGACTTGATGAGAATTCTGAATATTGCCGCTTTTGCTGTATCTGGCTATGCATCAACAGAAGGTCGGCAGTGCAAACCCTTTAATCCTCTCCTTGGGGAAACCTATGAGGCTGATTATCCTGATAAAGGTCTTCGCTTCTTCTCTGAAAAAGTGAGTCACCACCCAATGATTGTTGCTTGCCACTGTGAGGGGAGAGGCTGGAAGTTCTGGGCAGACTCTAATCTCAAAGGGAAGTTCTGGGGCCGTTCCATTCAGCTTGATCCTGTGGGTGTCCTTACCCTGCAGTTTGATGATGATGAGACATTCCAATGGAGCAAAGTCACTACTTCTATATACAATATCATACTAGGTAAAATCTATTGTGATCACTATGGAACCATGCGCATCAAGGGCAGTGGAAATTACTCCTGTAAGCTGAAGTTCAAGGAGCAGTCTATTATAGACCGAAATCCACATCAGGTTCATGGATTTGTGCAAGATAATCGAACTGGAGAGAAGGTAGCTATGTTGGTGGGGAAATGGGATGAGGCAATGTATTATGTGTTGGGAGATCCAACAACAAAGCCAAAAGGGCTTATTGGAAAAATTGCCACCTACTGA 2010 0.4438 MNPLCCIAPVSIDRDRANPGPCQLGLESSVKNVNIGSKQGFSAQVSSINAESDAVSHDVEDAFPEARDGKVFGAGGGVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPAREKSLKVIGEDSLRCMKKNSWSNHHRLAGSAKQWKPFGEIHLKVSSIRASKSDDKRLSIFTGTKTLHLRCISREDRSAWIEALQAAKDLFPRVLTSSDFAPSEDIVVSTEKLRLRLVQEGVGEVVIKDCESIMLSELSELQNQFKALQRKHIILLDTLRQLETEKIELETTVVDETKERESYCGQGNRRFSDFYSIMSEGSGSDSDADNESQDGVDVETDEDDIVFFDTNDFLSSESLRSASYRSRETLGNGTLINNRDPFLSDHLHDEMEIRTVEYPYIKRRDSLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRAMEWGKQGNDLMRILNIAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFDDDETFQWSKVTTSIYNIILGKIYCDHYGTMRIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGLIGKIATY* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0677 669 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 78 660 IPR000648 GO:0008289
Vvi1g0677 669 Gene3D - 503 664 - -
Vvi1g0677 669 FunFam oxysterol-binding protein-related protein 1D isoform X1 503 667 - -
Vvi1g0677 669 CDD PH_ORP_plant 81 213 - -
Vvi1g0677 669 Pfam Oxysterol-binding protein 418 650 IPR000648 GO:0008289
Vvi1g0677 669 ProSiteProfiles PH domain profile. 75 208 IPR001849 -
Vvi1g0677 669 SMART PH_update 76 210 IPR001849 -
Vvi1g0677 669 Pfam Pleckstrin homology domain 80 205 - -
Vvi1g0677 669 SUPERFAMILY Oxysterol-binding protein-like 412 655 IPR037239 -
Vvi1g0677 669 Coils Coil 250 298 - -
Vvi1g0677 669 SUPERFAMILY PH domain-like 79 208 - -
Vvi1g0677 669 Gene3D - 77 210 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0677 Vvi-Chr1 6820134 6829202 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0677 K20456 - vvi:100257862 1333.16