Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0676 ATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCCGACAGTTGTTGCTGTCAACGAGTCGTTCTTGAATCAAAATCGGAGCTCCACCAAAGGCAATTGGCTTGCGCAACATAGCGCTGGCGTGATGGCCGATCTTGATTTCTTTATAGGAGATGAGGCTATTGCGAGATCTCGGAATAGTAGTACTTACAATCTAAGCTATCCGATTGTTCACGGTCAGGTTGATAATTGGGATGCCATGGAGAGATTTTGGCAGCAGTGTATATTTAATTATTTGAGATGTGATCCGGAGGATCACTACTTTCTTTTGACGGAAAGTCCACTCACTGCCCCGGAGAGCCGTGAATACACTGGTGAAATTATGTTTGAAACCTTCAACGTTCCTGGTCTTTATATTGCGGTGCAGCCGGTGCTCGCCCTTGCGGCAGGATACACTACATCTAAGTGTGAGATGACAGGGGTTGTAGTGGATGTTGGGGATGGGGCTACTCATGTTGTACCTGTTGCAGATGGTTATGTTATTGGGAGCAGCATTAAGTCAATTCCTATTGCTGGGAAAGATGTTACTCTTTTTGTCCAACAGCTCATGCGGGAAAGAGGAGAGCATGTGCCGCCTGAAGACTCTTTTGAAGTAGCTCGAAAAGTGAAGGAAATGTATTGCTATACATCTTCTGATATCGTCAAGGAGTTCAATAAGCATGACAAAGAGCCTGGGAAGTACATAAAGCATTGGAGGGGCATCAAACCGAAGACAGGAGCACCATACTCTTGTGATGTTGGCTATGAACGATTTCTAGGCCCTGAGATTTTCTTCAATCCTGAGATCTACAGCAGCGATTTTGCAACCCCTTTACCAGCTGTAATAGACAAGTGTATTCAGTCTGCACCAATTGACACAAGAAGGGCTTTGTATAAGTTTTATCAGGAGGATCAACCATGTTCAAGGACTTCCACAGAAGGTTGCAGCGTGATGTAA 981 0.4536 MGFAGNVEPCFIAPTVVAVNESFLNQNRSSTKGNWLAQHSAGVMADLDFFIGDEAIARSRNSSTYNLSYPIVHGQVDNWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVQPVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVADGYVIGSSIKSIPIAGKDVTLFVQQLMRERGEHVPPEDSFEVARKVKEMYCYTSSDIVKEFNKHDKEPGKYIKHWRGIKPKTGAPYSCDVGYERFLGPEIFFNPEIYSSDFATPLPAVIDKCIQSAPIDTRRALYKFYQEDQPCSRTSTEGCSVM* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0676 326 SMART actin_3 2 326 IPR004000 -
Vvi1g0676 326 FunFam Actin-related protein 3 (ARP3) 185 283 - -
Vvi1g0676 326 SUPERFAMILY Actin-like ATPase domain 153 307 IPR043129 -
Vvi1g0676 326 Gene3D Actin; Chain A, domain 4 187 279 - -
Vvi1g0676 326 Gene3D - 1 159 - -
Vvi1g0676 326 FunFam Actin-related protein 3 1 152 - -
Vvi1g0676 326 Gene3D - 160 307 - -
Vvi1g0676 326 PANTHER ACTIN 2 307 IPR004000 -
Vvi1g0676 326 Pfam Actin 1 307 IPR004000 -
Vvi1g0676 326 SUPERFAMILY Actin-like ATPase domain 1 157 IPR043129 -
Vvi1g0676 326 CDD NBD_sugar-kinase_HSP70_actin 68 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0676 Vvi-Chr1 6785040 6809946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0676 2 306 Miscellaneous Gene Families AT2G42100 33.770 1.89e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0676 K18584 - vvi:100259418 632.869