Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0675 ATGGCTGAAGAGCAATTAGATTATGAAGATGAGGAATATGGAGGGGCTCAGAAGATGCCATTTCAGGGAGGTGGAGCCATTTCTGCACTTGCAGATGATGAGCTGATGGGGGAAGACGATGAATATGATGATCTTTACAATGATGTTAATGTTGGAGAGGGTTTTCTGCAGATGCACCGATCTGAAGCACCAGCACCATCAGGTGTTATGGCTGGTGGGCCGTTCCAAGCTCATAAAACCGATGTCCCACCACAAAAACTAGAAGCTGGCACTTCACAGGGGCTGATCATCCCAGGAGTTTCAATTGAAGGGAAGTATTCTAATCCCCATTTCCATGAGAAGAAGGAAGGGCCAATGGCTGTTAAGGGGCCGGAAATGGGATCTACTAGCCACTTAGATGGGCCTTCAGTTTCACAGAAGGGAAGGGTTTTGGAGATGACTCATGATACTCAAGTCAGAAATTTGGGATTTCAAGGATCGACTCCAATTCCCCAAAAGACTGGGGCTGAACCAAGTGATGTGCATGGAAAAATTGCTAATGAGTCCACACCAGTCCTGAATTCTGGAACTGGTGGTCCTAGAGCTGTTCCACAGATGTTGAGTAACCAAATGGGAATGAATGTGAATGTGAACCGTCCAATGGTTAATGAAAATCAAATCCGGCCAGCTGTGGATAATGGTGCAACCATGCTCTTTGTAGGAGAACTACATTGGTGGACAACTGATGCAGAACTTGAAAGTGTGTTATCTCAATATGGAAGGGTGAAGGAGATTAAGTTCTTTGATGAGAGAGCTAGTGGTAAATCCAAAGGCTATTGTCAAGTTGAGTTCTATGATGCTTCTGCTGCAGCCGCATGTAAAGAAGGAATGAATGGTTATATTTTCAATGGCCGAGCTTGTGTGGTAGCCTTTGCTTCTCCACAGACTTTGAAGCAGATGGGAGCTTCTTATATGAACAAAACTCAAGCCCAATCTCAGTCTCAGGGAAGGAGGCCTATGAATGATGGGGTGGGAAGAGGTGGTGGGATGAATATGCAAGGAGGAGATGCCGGGAGGAACTATGGAAGAGGTGGTTGGGGCCGTGGAGGGCAGGGAATACTCAACAGAGGCCCTGGGGGTGGAGGACCAATGAGGGGAAGAGGGGGTGCTGTGGGAGCAAAGAACATGGTTGGAAACACTGCTGGTGTTGGTGCCAGTGGAGGAGGGTATGGGCAAGGTCTTGCAGGTCCCACATTTGGAGGTCCTGCTGGTGGTTTGATGCATCCTCAGGGTATGATGGGTTCTGGATTTGATCCAACATATATGGGTCGAGGAGGTGCTTATGGAGGGTTCTCTGGTTCTGCTTTTCCTGGGATGGTACCTTCATTTCCAGCTGTTAATACAATGGGACTTGCAGGGGTGGCCCCTCATGTCAACCCTGCCTTCTTTGGCCGGGGAATGGCAGCCAATGGAATGGGAATGATGGGTGCTACTGGAATGGATGGGCACCATGCAGGAATGTGGACTGACACGAGTATGGGTGGATGGGGAGGAGAGGAACATGGCCGAAGGACTAGGGAGTCAAGTTATGGTGGAGATGATGGTGCTTCTGACTATGGGTATGGAGAGGTGAACCATGAAAAAGTTGGAAGGTCAAATACTGCCTCCCGGGAAAAGGAAAGGGGTTCTGAGCGTGACTGGTCAGGGAACTCTGAGAGAAGGCATCGTGATGAGAGGGAGCAAGACTGGGAGAGGTCAGATAAGGATCACAGGTACCGGGAAGAAAAAGATGGATATCGTGACCATCGACAACGTGAACGTGACTTCAATAATGAGGATGATTGGGACAGAGGACAATCTTCTTCGAGATCTCGGAGCAGGTCCCGGGCTGTGGCAGATGAAGATCATAGGTCTCGCTCAAGGGATGGTGATTATGGGAAGAGGAGACGCTTGCCATCAGAGTGA 1944 0.4892 MAEEQLDYEDEEYGGAQKMPFQGGGAISALADDELMGEDDEYDDLYNDVNVGEGFLQMHRSEAPAPSGVMAGGPFQAHKTDVPPQKLEAGTSQGLIIPGVSIEGKYSNPHFHEKKEGPMAVKGPEMGSTSHLDGPSVSQKGRVLEMTHDTQVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGASYMNKTQAQSQSQGRRPMNDGVGRGGGMNMQGGDAGRNYGRGGWGRGGQGILNRGPGGGGPMRGRGGAVGAKNMVGNTAGVGASGGGYGQGLAGPTFGGPAGGLMHPQGMMGSGFDPTYMGRGGAYGGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGATGMDGHHAGMWTDTSMGGWGGEEHGRRTRESSYGGDDGASDYGYGEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYRDHRQRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRRRLPSE* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0675 647 MobiDBLite consensus disorder prediction 317 332 - -
Vvi1g0675 647 MobiDBLite consensus disorder prediction 1 22 - -
Vvi1g0675 647 MobiDBLite consensus disorder prediction 317 381 - -
Vvi1g0675 647 SUPERFAMILY RNA-binding domain, RBD 220 313 IPR035979 GO:0003676
Vvi1g0675 647 SMART rrm1_1 230 303 IPR000504 GO:0003723
Vvi1g0675 647 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 25 642 IPR034772 -
Vvi1g0675 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 300 IPR000504 GO:0003723
Vvi1g0675 647 CDD RRM_CFIm68_CFIm59 231 304 - -
Vvi1g0675 647 MobiDBLite consensus disorder prediction 510 524 - -
Vvi1g0675 647 MobiDBLite consensus disorder prediction 504 647 - -
Vvi1g0675 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Vvi1g0675 647 MobiDBLite consensus disorder prediction 533 647 - -
Vvi1g0675 647 Gene3D - 213 404 IPR012677 -
Vvi1g0675 647 MobiDBLite consensus disorder prediction 114 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0675 Vvi-Chr1 6778152 6780095 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0675 K14398 - vvi:100268141 1178.31