Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0673 ATGGCGTTAGCGTTCGACGAGTTCGGGAGACCATTCATAATACTAAAGGAGCAAGAACAGAAGAGCAGATTAAGAGGTTTGGATGCGCAGAAAGCTAACATTTCCGCTGGAAAAGCGGTGGCTCGCATCCTCCGCACCTCTCTTGGCCCCAAGGGCATGGACAAGATGCTTCAGAGTCCTGACGGCGATGTCACCATCACCAATGATGGCGCGACAATATTGGAGCAGATGGATGTTGACAATCAAATTGCAAAACTGGTGGTTGAGTTATCTCGGAGCCAGGATTATGAAATTGGTGATGGTACAACTGGAGTTGTTGTTATGGCTGGTGCACTTCTAGAGCAGGCTGAACGGCTACTTGAACGAGGTATTCATCCTATTCGGATTTCAGAGGGCTATGAAATGGCTTCTAGGATTGCTGTTGAACATTTGGAGCATATTGCTCAAAAGTTTGATTTTGGCGTAACAAATATAGAACCTTTGGTTCAAACCTGCATGACTACTCTATCATCAAAGATTGTGAATCGATGCAAGCGCAGTTTGGCTGAGATTGCTGTCAAAGCTGTGATGTCAGTTGCTGATTTAGAGAGAAAGGATGTTAACTTAGATTTAATTAAAGTAGAGGGAAAAGTGGGGGGAAAGTTGGAAGATACTGAGCTAATCTATGGAATCCTTGTAGACAAGGATATGAGCCATCCACAAATGCCAAAGCAAATTGAAGATGCAAAGATAGCTATATTAACTTGTCCCTTTGAGCCACCTAAGCCAAAAACTAAGCATAAGGTTGACATTGATACTGTAGAAAAATTCCAGACTTTACGTCAACAAGAGCAGAAGTACTTTGATGACATGGTTCAAAAATGCAAGGATGTTGGTGCTACCTTGGTTATCTGTCAATGGGGGTTTGATGATGAAGCAAACCATTTGTTGTTGCACAGGAACTTGCCTGCTGTCCGATGGGTTGGTGGTGTAGAGTTAGAGTTGATAGCTATAGCAACAGGTGGAAGAATTGTGCCAAGGTTCCAAGAATTGACACAAGAAAAGCTGGGGAAGGCTGGTTTGGTTCGTGAAAAATCATTTGGTACCACTAAAGATCGAATGCTGTATATTGAACACTGTGCAAATTCAAGGGCTGTAACTATATTTATTCGTGGTGGTAACAAAATGATGATAGAGGAGACAAAGCGTAGCATCCATGATGCGTTGTGTGTGGCTAGAAACCTCATTCGCAGCAATTCTATTGTGTATGGTGGTGGCTCTGCTGAGATTTCTTGCTCAATTGCTGTAGAGGCAGCTGCTGATAGATATCCAGGAGTTGAGCAGTATGCTATCAGAGCATTTGGAGATGCTTTGGATTCAATCCCCATGGCGCTTGCTGAGAATAGTGGCCTCCAACCCATTGAAACACTATCAGCAGTGAAGTCTCAGCAAATTAAGGAGGACAATCCCTATTGTGGGATAGACTGCAATGATGTTGGCACAAATGACATGCAAGAGCAAAATGTCTTTGAGACTCTGATTGGGAAGCAGCAGCAGATCTTGCTAGCAACACAAGTTGTCAAGATGATTCTAAAGATCGATGATGTCATCAGCCCCTCTGAATACTGA 1608 0.4328 MALAFDEFGRPFIILKEQEQKSRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLVVELSRSQDYEIGDGTTGVVVMAGALLEQAERLLERGIHPIRISEGYEMASRIAVEHLEHIAQKFDFGVTNIEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVMSVADLERKDVNLDLIKVEGKVGGKLEDTELIYGILVDKDMSHPQMPKQIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLLHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTQEKLGKAGLVREKSFGTTKDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRSNSIVYGGGSAEISCSIAVEAAADRYPGVEQYAIRAFGDALDSIPMALAENSGLQPIETLSAVKSQQIKEDNPYCGIDCNDVGTNDMQEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0673 535 FunFam T-complex protein 1 subunitTheta, putative 413 530 - -
Vvi1g0673 535 FunFam T-complex protein 1 subunit epsilon 222 376 - -
Vvi1g0673 535 NCBIfam thermosome subunit beta 11 531 - -
Vvi1g0673 535 CDD TCP1_epsilon 6 531 IPR012718 GO:0005524|GO:0006457|GO:0051082
Vvi1g0673 535 NCBIfam thermosome subunit alpha 11 531 - -
Vvi1g0673 535 ProSitePatterns Chaperonins TCP-1 signature 3. 94 102 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi1g0673 535 ProSitePatterns Chaperonins TCP-1 signature 1. 45 57 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi1g0673 535 Gene3D GroEL 222 376 IPR027409 -
Vvi1g0673 535 SUPERFAMILY GroEL apical domain-like 217 385 IPR027409 -
Vvi1g0673 535 SUPERFAMILY GroEL-intermediate domain like 156 411 IPR027410 -
Vvi1g0673 535 Gene3D - 37 530 IPR027413 -
Vvi1g0673 535 ProSitePatterns Chaperonins TCP-1 signature 2. 66 82 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi1g0673 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 64 82 IPR017998 GO:0140662
Vvi1g0673 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 414 426 IPR017998 GO:0140662
Vvi1g0673 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 58 IPR017998 GO:0140662
Vvi1g0673 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 94 113 IPR017998 GO:0140662
Vvi1g0673 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 380 402 IPR017998 GO:0140662
Vvi1g0673 535 NCBIfam T-complex protein 1 subunit epsilon 3 532 IPR012718 GO:0005524|GO:0006457|GO:0051082
Vvi1g0673 535 FunFam T-complex protein 1 subunit delta 33 150 - -
Vvi1g0673 535 PANTHER CHAPERONIN 23 530 IPR017998 GO:0140662
Vvi1g0673 535 SUPERFAMILY GroEL equatorial domain-like 21 531 IPR027413 -
Vvi1g0673 535 Gene3D - 150 412 IPR027410 -
Vvi1g0673 535 FunFam T-complex protein 1 subunit epsilon 377 412 - -
Vvi1g0673 535 Pfam TCP-1/cpn60 chaperonin family 40 531 IPR002423 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0673 Vvi-Chr1 6749249 6767310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0673 178 483 EF-hand Containing Proteins AT3G14270 22.156 1.58e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0673 K09497 - vvi:100264594 1043.49