Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0671 ATGGATGCCACAAGGAGCGGGACGCCCACTGTTCAATACCATAACATACCTGACCAACCAATTGCTGCTATTGTCACCTCCCCATTACCAACATTTCAAAGACAACAACGACACTGCTTTGGGGACTCAAGCCCTGGAGAATTTCCATTGGCTGCCAACCCCTCCATTGTTCTCCATGTCCTCACGGCATGTAACTTGGAACCTCAGGATCTTGCAAAGCTCGAGGCAACATGTTCCTTCTTCAGGCAGCCTGCACACTTTGCCCCTGATTTTGAACTGTCCATATCGGAGCTTGCTGCTCTGGATATGTGCCTAAAGAGGGCCATATTTAGGCCAATGATGCTAGAAGAACGTGAAGTTCTAAAGCAAAGGTGCGGAGGCTCATGGAAACTCGTTCTGAGGTTTTTGCTGGCTGGAGAAGCATGTTGCAGGAGGGAGAAGTCACAGGCAATAGCAGGACCAGGTCACAGCATTGCTGTGACAGTGAAAGGAGCTGTTTACTCATTTGGCTCTAACAGCTCTGGACAGCTTGGACATGGCACCACAGATGAGGAATGGAGGCCTCGCCAAATAAGATCTTTGGAAGGCATTCGCATTATCCAAGCAGCTGCAGGGGCTGGCAGGACAATGCTGATCAGTGATGCTGGCCAGGTTTATGCCTTTGGAAAGGACTCCTTTGGGGAAGCCGAATATGGGGTTCAAGGAACTAAACTAGTAACAACTCCACAATTGGTTGAGTCTTTGAAAAACATATTTGTGGTACAAGCTGCAATTGGTAATTTCTTCACAGCTGTGCTGTCAAGAGAAGGCAGGGTGTATACATTTTCTTGGGGTAATGATGCCAAACTTGGGCACCAAACGGAAGCAAATGATTTGGAACCTCATCCTTTGTTGGGGGCACTAGAAAATATACCAGTGGTGCAAATTGCAGCTGGATACTGCTATCTTCTTGCTCTAGCTTGTCAGCCTAATGGCATGTCCGTATACTCTGTTGGCTGTGGCTTGGGTGGGAAGCTTGGACATGGCACAAGAACTGATGAGAAGCACCCTCGACTGATTGAACAATTTCGGATTCTGAACCTTCAGCCCATGGTGGTTGCAGCTGGTGCTTGGCATGCTGCTGTGGTTGGGCGGGACGGTCGGGTCTGCACATGGGGTTGGGGGCGTTATGGGTGCTTAGGTCATGGGAATGAAGAGTGTGAATCAGTTCCAAAGGTAGTGGAAGCTTTGATTAATGTCAAAGCTGTTCACGTTGCTACAGGGGATTACACAACCTTTGTGGTGTCTGATGATGGCGATGTCTACTCATTTGGGTGTGGAGAATCATCCAGTCTTGGGCATAATAATGGGCCTGATGGACAGGGAAATAGGCATGCTAACATCTTAAGCCCAGAATTAGTAACATCACTGAAGCAGATTAAGGAGCGGATGGTACAGATCAGCCTCACCAATTCCATATACTGGAATGCCCACACTTTTGCGCTCACTGAAACAGGGAAGCTGTATGCATTTGGTGCAGGAGACAAAGGGCAGTTGGGTGTAGAGCTCGTTGCCAACCAAACTGAGAGGGGAAATCCAGAGCGGGTTGATATTGATCTCAGCTAG 1605 0.4847 MDATRSGTPTVQYHNIPDQPIAAIVTSPLPTFQRQQRHCFGDSSPGEFPLAANPSIVLHVLTACNLEPQDLAKLEATCSFFRQPAHFAPDFELSISELAALDMCLKRAIFRPMMLEEREVLKQRCGGSWKLVLRFLLAGEACCRREKSQAIAGPGHSIAVTVKGAVYSFGSNSSGQLGHGTTDEEWRPRQIRSLEGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTTPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDAKLGHQTEANDLEPHPLLGALENIPVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGTRTDEKHPRLIEQFRILNLQPMVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESVPKVVEALINVKAVHVATGDYTTFVVSDDGDVYSFGCGESSSLGHNNGPDGQGNRHANILSPELVTSLKQIKERMVQISLTNSIYWNAHTFALTETGKLYAFGAGDKGQLGVELVANQTERGNPERVDIDLS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0671 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 322 IPR000408 -
Vvi1g0671 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 164 215 IPR000408 -
Vvi1g0671 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 431 IPR000408 -
Vvi1g0671 534 Gene3D - 146 321 IPR009091 -
Vvi1g0671 534 Gene3D - 322 533 IPR009091 -
Vvi1g0671 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 534 IPR000408 -
Vvi1g0671 534 SUPERFAMILY RCC1/BLIP-II 148 449 IPR009091 -
Vvi1g0671 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 432 498 IPR000408 -
Vvi1g0671 534 PRINTS Chromosome condensation regulator RCC1 signature 369 387 IPR000408 -
Vvi1g0671 534 PRINTS Chromosome condensation regulator RCC1 signature 147 160 IPR000408 -
Vvi1g0671 534 PRINTS Chromosome condensation regulator RCC1 signature 166 182 IPR000408 -
Vvi1g0671 534 PRINTS Chromosome condensation regulator RCC1 signature 427 448 IPR000408 -
Vvi1g0671 534 PRINTS Chromosome condensation regulator RCC1 signature 216 232 IPR000408 -
Vvi1g0671 534 PRINTS Chromosome condensation regulator RCC1 signature 256 272 IPR000408 -
Vvi1g0671 534 PRINTS Chromosome condensation regulator RCC1 signature 272 286 IPR000408 -
Vvi1g0671 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 379 IPR000408 -
Vvi1g0671 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 216 269 IPR000408 -
Vvi1g0671 534 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 366 376 IPR000408 -
Vvi1g0671 534 Pfam Regulator of chromosome condensation (RCC1) repeat 431 481 IPR000408 -
Vvi1g0671 534 Pfam Regulator of chromosome condensation (RCC1) repeat 163 212 IPR000408 -
Vvi1g0671 534 Pfam Regulator of chromosome condensation (RCC1) repeat 216 266 IPR000408 -
Vvi1g0671 534 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Vvi1g0671 534 Pfam Regulator of chromosome condensation (RCC1) repeat 379 428 IPR000408 -
Vvi1g0671 534 Pfam Regulator of chromosome condensation (RCC1) repeat 269 318 IPR000408 -
Vvi1g0671 534 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 293 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0671 Vvi-Chr1 6729062 6731998 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0671 - - vvi:100247438 1062.37