Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0665 ATGAATGATAAGTGTCGGCAGAGCGGCATGTGGTTGATTTTGCGTGGCCAAGAATCCCAGATCCACTGGGCTTCAGCTTCAGACGATCCATCGACAATGGAGCTGCCTGACCTTGTTCTAATGGCAGCTAGTATCTTAGGCTTCATTGCACTCTGTAAAACCCTCGTCAGGCTTGTGAGATGGGCGTGGACGATGTTCTTGAGACCTCCAAAGAATCTGAAAGAATATGGCTCATGGGCGCTCGTCACTGGCTCTACTGATGGGATTGGCAAAGCCATGGCCTTTGAGTTGGCATCAAAGGGTCTTAGCTTGGTGTTAGTGGGTCGAAACCCTTGTAAACTCGAGGCCGTGTCGAATGAGATACGGGAAAGGCATGGCGAAGGAGTTGAAGTTAAAAATATTGTTATAGACTTTGCAAAGCTTAGCGAGGAGGAGATAGCAAGAAGGATAGACGAAGGAATAAAAGGGATGGATGTTGGTGTTTTGGTTAATAATGTGGGTTTGGCATACCCTTACCCGAGGTTCTTTCATGAGGTGAACTTAGAGTTGATGGAGAGTGTTGGAAGAGTGAATATAGGTGGGACGACTTGGGTCACCAGATCAGTGCTTCCAGGCATGCTTAAGAAGAAAAAAGGGGCGATTATCAACATTGGATCCGCTTCTGTTTGGCTTCAATCTTACCCTTTAGCCACCCTCTATGCTGCTACCAAAGCGTACATGGCAATGTTCTCAAAATCTATCTCTATGGAGTATCGGCAGTATGGAATCGATGTTCAGTGCCAGTTTCCATTACTTGTGGCAACAAAGATGACATTGATCAAGAGGTCTTCCTTACTCATTCCATCACCAGAGACATTTAGCAAGGCAAGCATACGGTGGTTTGGATATGAACATGAATGTACGCCCTATTGGCCACATTCTGTACAGTGGTACGTTTCAAGCCTACTGCCAAATGCTCTATTGGATTGGTGTGTCCTCCGATACTTTCTTGGAATGCGAACGCGAGGACAAGCCAAGGAGCGGAAGAAAAGTAGGGTTAATCAACAGGACCCATGA 1056 0.4631 MNDKCRQSGMWLILRGQESQIHWASASDDPSTMELPDLVLMAASILGFIALCKTLVRLVRWAWTMFLRPPKNLKEYGSWALVTGSTDGIGKAMAFELASKGLSLVLVGRNPCKLEAVSNEIRERHGEGVEVKNIVIDFAKLSEEEIARRIDEGIKGMDVGVLVNNVGLAYPYPRFFHEVNLELMESVGRVNIGGTTWVTRSVLPGMLKKKKGAIINIGSASVWLQSYPLATLYAATKAYMAMFSKSISMEYRQYGIDVQCQFPLLVATKMTLIKRSSLLIPSPETFSKASIRWFGYEHECTPYWPHSVQWYVSSLLPNALLDWCVLRYFLGMRTRGQAKERKKSRVNQQDP* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0665 351 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 73 301 - -
Vvi1g0665 351 PANTHER RH59310P 41 343 - -
Vvi1g0665 351 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 220 248 IPR020904 GO:0016491
Vvi1g0665 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 168 IPR002347 -
Vvi1g0665 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 233 252 IPR002347 -
Vvi1g0665 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 220 IPR002347 -
Vvi1g0665 351 PIRSF 11-beta-HSD1 31 341 - -
Vvi1g0665 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 292 IPR036291 -
Vvi1g0665 351 PRINTS Glucose/ribitol dehydrogenase family signature 79 96 IPR002347 -
Vvi1g0665 351 PRINTS Glucose/ribitol dehydrogenase family signature 254 271 IPR002347 -
Vvi1g0665 351 PRINTS Glucose/ribitol dehydrogenase family signature 157 168 IPR002347 -
Vvi1g0665 351 PRINTS Glucose/ribitol dehydrogenase family signature 206 222 IPR002347 -
Vvi1g0665 351 PRINTS Glucose/ribitol dehydrogenase family signature 233 252 IPR002347 -
Vvi1g0665 351 Gene3D - 73 294 - -
Vvi1g0665 351 Pfam short chain dehydrogenase 79 271 IPR002347 -
Vvi1g0665 351 CDD 17beta-HSD1_like_SDR_c 77 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0665 Vvi-Chr1 6666509 6668294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0665 40 343 Lipid Metabolism Gene Families AT1G67730 48.852 9.12e-108 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0665 K10251 - vvi:100244068 712.22