Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0663 ATGGAGTTGCCTGATGTTGTTCTGATGGCAGCTAGTATCGTAGGCTTCATTGCTCTCTGTAAACCCCTCGTTGGTCTTGTGAAATGGGTGTGGGCGATGTTCTTAAGGCCTCCAAAGAATCTGAAAGAATATGGCTCGTGGGCTCTCGTCACTGGCTCCACTGATGGGATAGGCAAAGCCATGGCTTTTGAATTGGCATCAAAGGGTCTCAGCTTGGTGCTAGTGGGTCGAAACCCTTCTAAACTCAAAGCTGTGTCGAATGAGATACGGGAAAGGCATGGTGAACAAGTTGAAGTTAAAAGTATTGTCATCGACTTTGCAAAGTTCAGCGGGGAGGAGATAGCGGCATTTATAAAGGAAGGAATAGAAGGAACAGATGTTGGTGTTTTGATTAATAATGTGGGCTTGGCATACCCTTACGCTAGGTTCTTTCATGAGGTTGACTTGGAGTTGATGGGAAGTGTCATGAGAGTGAATATAGAAGGAGCAACTTGGGTCACCAGATCAGTGCTTCCAGGCATGCTTGAGAAGAAAAAAGGGGCAATTATCAACATTTGCTCGGGTTCTGTTCTGCTGCCATCTTACCCATTAGTCACCCTTTACGTTGCAGCCAAAGCGTACATGGCAATGTTGTCAAAATCTATTAATTTGGAGTACCAGCAATATGGAATCGATGTTCAGTGCCAGGTATAA 693 0.4502 MELPDVVLMAASIVGFIALCKPLVGLVKWVWAMFLRPPKNLKEYGSWALVTGSTDGIGKAMAFELASKGLSLVLVGRNPSKLKAVSNEIRERHGEQVEVKSIVIDFAKFSGEEIAAFIKEGIEGTDVGVLINNVGLAYPYARFFHEVDLELMGSVMRVNIEGATWVTRSVLPGMLEKKKGAIINICSGSVLLPSYPLVTLYVAAKAYMAMLSKSINLEYQQYGIDVQCQV* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0663 230 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Vvi1g0663 230 PRINTS Glucose/ribitol dehydrogenase family signature 201 220 IPR002347 -
Vvi1g0663 230 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Vvi1g0663 230 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Vvi1g0663 230 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 201 220 IPR002347 -
Vvi1g0663 230 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Vvi1g0663 230 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Vvi1g0663 230 FunFam Uncharacterized protein 41 229 - -
Vvi1g0663 230 PANTHER RH59310P 9 230 - -
Vvi1g0663 230 Gene3D - 41 229 - -
Vvi1g0663 230 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 228 IPR036291 -
Vvi1g0663 230 CDD 17beta-HSD1_like_SDR_c 45 228 - -
Vvi1g0663 230 Pfam short chain dehydrogenase 47 228 IPR002347 -
Vvi1g0663 230 PIRSF 11-beta-HSD1 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0663 Vvi-Chr1 6639469 6640404 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0663 8 230 Lipid Metabolism Gene Families AT1G67730 51.786 1.77e-81 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0663 K10251 - vvi:100259451 451.825