Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0657 ATGTCGATGGAGTTGCCTGATTTTGTCCTATTAGCAGTCAGTACCCTAGGCTTCATAACTATCTTTAAAACCCTTGTCAGTGTCGTGAAATGGGTGTGGATCATGTTCTTGAGACCACCAAGGAATCTGAAAGACTATGGCTCATGGGCTGTCGTCACCGGCTCTACCGATGGAATTGGCAAAGCCCTGGCTTTTGAGTTGGCTTCAAAGGGTCTTAACCTCGTACTAGTGGGTCGAAACCCTTTGAAACTCGAAGCTGTATTGAGGGAGGTAAGGGAGAGACATGGTCAACAGGTTGAGGTTAAAACTATTGTCATTGACCTAGATAAGGTTGAAGGAGAGGAGATAGCTAGGACTATGGAGGAAGGAATCGAGGGTTTAGATGTTGGAGTTTTGATTAATAACGCTGGCTTGTCGTATCCATATGCCAAATTCTTTCATGAGGTCGATGTAGAGTTGATGAAAAGTATTATAAAAGTGAACGTGGAAGGGGCAACCTGGATCTCAAGGGCAGTGCTTCCAGGCATGTTAAAGAAGAAAAAAGGGGCTATTGTCAACATTGGTTCGGGTTCTTCCGTCGCTGTTTCTTCCTACCCTTTACATGCCATTTATGTTGCTACCAAAGCGTACGTAGCCATGTTCTCAAAATGTATCAGCTTGGAATACCGGAAACGAGGAATTGATATCCAGTGCCAGATTCCATTACTTGTGGCAACAAAGATGACATCCATAAAGAGGCCCTCCTTCTTTGTTCCATCACCAGAGATGTTCAGCAGAGCAAGCATTAGGTGGATTGGTTATGAACATATATGTGTACCCTATTGGACACATTCTGTGCAGTGGTGCCTAACAAATGCATTGCCAGATGCATTGTTGGATTGGTGTCTCCTCTGGTACTTTCTTGGTGTACGAAGGAGAGGCCTAGTGAAGGATATGGAGGCTACTGAAAAGAAGGAGAAAAACCCATGA 969 0.4438 MSMELPDFVLLAVSTLGFITIFKTLVSVVKWVWIMFLRPPRNLKDYGSWAVVTGSTDGIGKALAFELASKGLNLVLVGRNPLKLEAVLREVRERHGQQVEVKTIVIDLDKVEGEEIARTMEEGIEGLDVGVLINNAGLSYPYAKFFHEVDVELMKSIIKVNVEGATWISRAVLPGMLKKKKGAIVNIGSGSSVAVSSYPLHAIYVATKAYVAMFSKCISLEYRKRGIDIQCQIPLLVATKMTSIKRPSFFVPSPEMFSRASIRWIGYEHICVPYWTHSVQWCLTNALPDALLDWCLLWYFLGVRRRGLVKDMEATEKKEKNP* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0657 322 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 191 219 IPR020904 GO:0016491
Vvi1g0657 322 PANTHER RH59310P 10 313 - -
Vvi1g0657 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 138 IPR002347 -
Vvi1g0657 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 182 190 IPR002347 -
Vvi1g0657 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Vvi1g0657 322 Gene3D - 44 271 - -
Vvi1g0657 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 311 IPR036291 -
Vvi1g0657 322 PIRSF 11-beta-HSD1 1 310 - -
Vvi1g0657 322 FunFam very-long-chain 3-oxoacyl-CoA reductase 1 43 273 - -
Vvi1g0657 322 CDD 17beta-HSD1_like_SDR_c 47 288 - -
Vvi1g0657 322 PRINTS Glucose/ribitol dehydrogenase family signature 127 138 IPR002347 -
Vvi1g0657 322 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Vvi1g0657 322 PRINTS Glucose/ribitol dehydrogenase family signature 176 192 IPR002347 -
Vvi1g0657 322 PRINTS Glucose/ribitol dehydrogenase family signature 225 242 IPR002347 -
Vvi1g0657 322 PRINTS Glucose/ribitol dehydrogenase family signature 204 223 IPR002347 -
Vvi1g0657 322 Pfam short chain dehydrogenase 49 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0657 Vvi-Chr1 6622461 6624298 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0657 10 311 Lipid Metabolism Gene Families AT1G67730 51.987 1.18e-119 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0657 K10251 - vvi:100257722 646.351