Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0653 ATGGAGCTGGAACCTCCTTTGCATAATGATCAGCAGAAGCTCTCTGAGAAGAGCTGTGTTAGGTTGTTGGGAAAAGTTGCAATTATAACTGGGGGTGCAAGAGGGATTGGAGCAGCCACAGCAAAATTGTTTGCTAGGCATGGTGCCCATGTTATCATAGCTGATGTACTCGATCACTTGGGGTTCACTCTTGCCGATTCAATAGGCGGCCGCTATATACACTGCGACGTGGCCAAGGAAGATGACATGGAGTCAGCTGTTCAGCTGGCACTCACATGGAAAGGCCAACTAGATATCATGTTCAACAATGCCGGCATTGGAGGGCTGGATGGCAGCGTCACCAACATTGACATGACCAAGATGAAGGCCCTTCTTGCAGTTAATGTGAACGGCAACATACATGGAATCAAACATGCGGCACGGGCCATGATCAGAGGGCGAAAAGGAGGGTGCATCATATGCACCTCCAGCTCTGCAGCCATCATGGGAGGCCTAGCATCACACGGCTACACATTGTCCAAAGAGGCTATTGTCGGACTCATGAGAAGCACCGCTTGTGAGTTGGGGGTGCATGGAATCCGCGTTAATTGCATTTCGCCACATGGGGTCCCTACAGAGATGCTTGTGAGTGGGTACCGAAAGATCCTGGGAAAAGCGGATGTGACGCCTGAAGAAGTGAGTCGAATTGTGGGGAAGAGAGGGAGCCTGCTGCGTGGGAGGGGTGGGAGTGTGGAAGACATTGCACAGGCCGCGCTGTTTTTGGCCAGCGAAGATGCGGGCTTCATAACAGCACACAATCTTGTCCTTGATGGGGGTTTTACTTCTGCTTGCAGCGACATGAGTTTCATCTACCAAGAACCGACTTGA 867 0.5133 MELEPPLHNDQQKLSEKSCVRLLGKVAIITGGARGIGAATAKLFARHGAHVIIADVLDHLGFTLADSIGGRYIHCDVAKEDDMESAVQLALTWKGQLDIMFNNAGIGGLDGSVTNIDMTKMKALLAVNVNGNIHGIKHAARAMIRGRKGGCIICTSSSAAIMGGLASHGYTLSKEAIVGLMRSTACELGVHGIRVNCISPHGVPTEMLVSGYRKILGKADVTPEEVSRIVGKRGSLLRGRGGSVEDIAQAALFLASEDAGFITAHNLVLDGGFTSACSDMSFIYQEPT* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0653 288 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 21 275 - -
Vvi1g0653 288 FunFam Short-chain dehydrogenase reductase 11 279 - -
Vvi1g0653 288 Gene3D - 7 284 - -
Vvi1g0653 288 PRINTS Glucose/ribitol dehydrogenase family signature 237 257 IPR002347 -
Vvi1g0653 288 PRINTS Glucose/ribitol dehydrogenase family signature 26 43 IPR002347 -
Vvi1g0653 288 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Vvi1g0653 288 PRINTS Glucose/ribitol dehydrogenase family signature 191 208 IPR002347 -
Vvi1g0653 288 PRINTS Glucose/ribitol dehydrogenase family signature 170 189 IPR002347 -
Vvi1g0653 288 PRINTS Glucose/ribitol dehydrogenase family signature 144 160 IPR002347 -
Vvi1g0653 288 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 274 IPR036291 -
Vvi1g0653 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 IPR002347 -
Vvi1g0653 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Vvi1g0653 288 Pfam Enoyl-(Acyl carrier protein) reductase 31 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0653 Vvi-Chr1 6584591 6585655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0653 22 274 Miscellaneous Gene Families AT2G29330 27.547 1.61e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0653 - - vri:117919788 536.954