Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0578 ATGAGCAACAATACAGCCACCATGCAAGAATCGTTCCCGATGACCGGGGGAGATGGGTCTTACAGCTACGCCAACAACTCCTACTTTCAGAGACAATGTGCAAATGCCTCCAAGTCTATGATTGAAGAGGCAATTGCTGAGAAGCTTGACGTACAGGCATTGTCTACAAAAACATTTTGCCTTGCGGATTTGGGATGTTCTGTTGGACCAAATACCTTCGTTGCTATGCAACATATAGTGGGGGCTGTAGAAAGGAGGTACCTGGCACTGGGCCTCAAATCTCACATAACTGAATTTCAAGTGTTCTTCAATGACCATGCAGCCAATGATTTCAATACCCTCTTCGCATCCCTCCCAACTGAAAGGCGGTACTTTGCCTGTGGCGTCCCGGGTTCTTTCCATGGCCGGTTATTCCCAGAGTCATCTATCCATTTTATGTATTCCTCTAACGCGCTCCACTGGCTCTCCAGGATGCCTGACGAGATACTGGACAAAAACTCTCCCCTGCATGGAACAAGGGAAGGGTTCACCATACTGGTGCCCCATATGAAGTAG 555 0.4811 MSNNTATMQESFPMTGGDGSYSYANNSYFQRQCANASKSMIEEAIAEKLDVQALSTKTFCLADLGCSVGPNTFVAMQHIVGAVERRYLALGLKSHITEFQVFFNDHAANDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMYSSNALHWLSRMPDEILDKNSPLHGTREGFTILVPHMK* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0578 184 Gene3D Vaccinia Virus protein VP39 26 156 IPR029063 -
Vvi1g0578 184 Gene3D - 12 170 IPR042086 -
Vvi1g0578 184 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 8 170 IPR029063 -
Vvi1g0578 184 Pfam SAM dependent carboxyl methyltransferase 46 168 IPR005299 GO:0008168
Vvi1g0578 184 FunFam SABATH methyltransferase 1 26 170 - -
Vvi1g0578 184 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 13 165 IPR005299 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0578 Vvi-Chr1 5695230 5696103 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0578 - - vvi:100264640 279.256