Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0569 ATGGAGCAAATTAATGAAAGTGCACTGACCCAGATGAGGAAATCAGTTCAGAAACTGGGGTCCTCCACAGAGAAGTACGGAGACCCAACACTCATGAGGTTCTTAATTGCGAGGTCAATGGACTCAGAAAAAGCAGCCAAGATGTTTGTACAGTGGCAGAAATGGAGAGCTGCATTGGTCCCAGATGGGTTCGTTCCCGAATCTGAAATACGGGAAGAGTTGGAAACGCGGAAAATTTATTTGCAGGGTCTATCCAAGAATGGTTACCCAGTTATGATCGTGAAAGCATGCAAGCATTTTCCCTCTAAGGATCATCTCCAATTCAAAAAATTTGTGGCTCATCTGCTGGACAAAACAATTGCGAGTTCTTTTAAAGGAAGAGAAATAGGGAATGAGAAGTTGATTGGCATTCTTGATCTACAACAAATTACATTCAAAAATGTTGATGCTCGTGGACTAATCACTGGTTTTCAATTTTTACAGTCTTACTATCCAGAGCGCTTAGCAAGATGTTTCATTTTAAACATGCCGGGCTTCTTTGTGAGTGTTTGGAGGATGGTTTCTTACTTCCTTGAGAAGGCAACCCTGGAGAAGATTGTGATAGTGAGCAATGAGGCTGAAAGAAGGGATTTTATCAAGGAAATCGGTGAAGAAGCACTACCAGAAGAGTATGGTGGACGATCAAACCTCATTGCTCTTCAAGATGTGACACTTACCCCATTAGAGGATTGA 732 0.4194 MEQINESALTQMRKSVQKLGSSTEKYGDPTLMRFLIARSMDSEKAAKMFVQWQKWRAALVPDGFVPESEIREELETRKIYLQGLSKNGYPVMIVKACKHFPSKDHLQFKKFVAHLLDKTIASSFKGREIGNEKLIGILDLQQITFKNVDARGLITGFQFLQSYYPERLARCFILNMPGFFVSVWRMVSYFLEKATLEKIVIVSNEAERRDFIKEIGEEALPEEYGGRSNLIALQDVTLTPLED* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0569 243 SUPERFAMILY CRAL/TRIO domain 68 229 IPR036865 -
Vvi1g0569 243 Gene3D - 1 235 IPR036865 -
Vvi1g0569 243 Pfam CRAL/TRIO domain 75 226 IPR001251 -
Vvi1g0569 243 PANTHER OS03G0850700 PROTEIN 4 236 - -
Vvi1g0569 243 SMART sec14_4 73 229 IPR001251 -
Vvi1g0569 243 SUPERFAMILY CRAL/TRIO N-terminal domain 3 66 IPR036273 -
Vvi1g0569 243 CDD SEC14 80 226 IPR001251 -
Vvi1g0569 243 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 67 232 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0569 Vvi-Chr1 5609650 5614781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0569 27 222 Acyl Lipid Metabolism Gene Families AT1G55840 25.943 5.53e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0569 - - vvi:100852609 482.641