Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0533 ATGTACCAAAACGATTACCAGAAATTCTCGGCTTCACCTCCGCCCTCAGCGCCTCCTTATACCTCCAGTCAACCCGCGATGGCCACGGGTATTCCGATTAGCTCCACCGGTAGTCTTCAACCTGGAACTGAGGTCCCTTGGTCCACGGGCCTTTGTGATTGCTTCTCGGACGTCACAAACTGTTGTATCACGTGCTGGTGTCCATGCATTACTTTTGGGCAGATTGCTGAGATCGTTGATAAAGGAACAGTGAGTTGTTTTGCAAGCGGCGCCATTTACGCAGCACTTGCATATTTCACGACCTGCGCCTGTCTCTTCTCCTGCTCGTACCGCACCAAATTGAGGAAGCAGTTGATGTTGAAAGAGAGCCCTTGTGAAGACTGCCTTGTTCATTTCTGTTGCGAGCCATGTTCTTTGTGTCAGGAGTACCGCGAGCTCACTCGCCGTGGTTTCGACATGTCCCTCGGATGGGAAGGAAATATGGAGAGACAGAATCGTGGAGTGGCGATGGCTCCCGTGGTGGAAAGAGGAATGCAGCGCTAG 543 0.5212 MYQNDYQKFSASPPPSAPPYTSSQPAMATGIPISSTGSLQPGTEVPWSTGLCDCFSDVTNCCITCWCPCITFGQIAEIVDKGTVSCFASGAIYAALAYFTTCACLFSCSYRTKLRKQLMLKESPCEDCLVHFCCEPCSLCQEYRELTRRGFDMSLGWEGNMERQNRGVAMAPVVERGMQR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0533 180 NCBIfam uncharacterized Cys-rich domain 46 147 IPR006461 -
Vvi1g0533 180 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g0533 180 PANTHER DUF614 FAMILY PROTEIN-RELATED 45 155 IPR006461 -
Vvi1g0533 180 Pfam PLAC8 family 47 145 IPR006461 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0533 Vvi-Chr1 5088257 5089186 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0533 - - vvi:100249261 380.563