Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0529 ATGATACTCTTGCAGTCTCCTTCCAGATTTCTTCTGCAAACCTTGTTAAATCGGGTTCAGAATCTTGAGAAAGGAGTTGAACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAGGTGTCAATGAAGTATCCACAATTCCTGCTGCTGTCAGTATCGTTACCCACTCCAGCTCAAGAGGCAGTTTTCTCTGGTGGGCTTCCCTTTGGAGCCATAGAAGCAATAAAAGCTTCATATGGTGTACTCGTACAAATTCTTGATCCTCCAAAAGACGGCTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAGAGTATAAACATGCTCTCTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTACTGGGTGCCCCACTAAGGGTAGTGCTAAAACATCTTGCTTCAAGGACTGTTGCTCCAGATATCAATCGGCCTTTTGCCCTTGTACATCGGCCGAAGGAGTCCTTTTTTCTTGTTCCTCAGGCTGAAAAGGTTACTGTTGTGTTTCCTATGAGATTCAAGGACTCCATAGATACTGTTCTTGCAACATCCTTCCTTCAGGAATTTGTTGAAGCAAGACGCACAGCTGGACTGAATAATGCTCCTCCTTGTCTGTGGTCTCCATCTCCTCCTCTAGAATTGAGGGGTACTGCTGGTGAAGCTTTATCTGCAAATGCAGGATTCGTTACTTTTGTCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGAGTTTATCAACATTTCGTGCATATGTTAGTTATCATGTTAAGTGCTCAGAGGGTTTCATGCACACTCGGATGAGACGTCGCGTGGAGTCCCTTATTCAGGCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAG 987 0.4407 MILLQSPSRFLLQTLLNRVQNLEKGVELDYQWVEFDDVRYHVQVSMKYPQFLLLSVSLPTPAQEAVFSGGLPFGAIEAIKASYGVLVQILDPPKDGFNLTLKLNLSKLPPDEEYKHALLVKIASVREVVLGAPLRVVLKHLASRTVAPDINRPFALVHRPKESFFLVPQAEKVTVVFPMRFKDSIDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSPPLELRGTAGEALSANAGFVTFVIFPRHVEGKKLDRTVWSLSTFRAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDLEKSKKTVQGRSFKRLSLKEAHTNSNSQRWS* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0529 328 Pfam Arp2/3 complex, 34 kD subunit p34-Arc 73 297 IPR007188 GO:0005885|GO:0015629|GO:0034314
Vvi1g0529 328 Gene3D - 139 313 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Vvi1g0529 328 MobiDBLite consensus disorder prediction 298 315 - -
Vvi1g0529 328 PANTHER ARP2/3 COMPLEX 34 KDA SUBUNIT 1 312 IPR007188 GO:0005885|GO:0015629|GO:0034314
Vvi1g0529 328 SUPERFAMILY Arp2/3 complex subunits 135 297 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Vvi1g0529 328 FunFam Arp2/3 complex 34 kDa subunit 1 138 - -
Vvi1g0529 328 SUPERFAMILY Arp2/3 complex subunits 1 129 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Vvi1g0529 328 FunFam Arp2/3 complex 34 kDa subunit 139 313 - -
Vvi1g0529 328 MobiDBLite consensus disorder prediction 298 328 - -
Vvi1g0529 328 Gene3D - 1 138 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0034314
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0529 Vvi-Chr1 5031140 5056751 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0529 K05758 - vvi:100261170 649.818