Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0499 ATGGCTCAGATAGATAAGATGGAAACCCATGTAGAGAAAAAGTCCCCTGCCAATGAGTTCTACGAGGTCTTCAGCAGCAAAGCTCATCTCATTCCCAAGGCCTGCCCTGACAAAATCAAGAGCATCGAAGTGGTTGAAGGTGATTGGAAGAGTGTGGGCTCTGTCAAGCTCTGGACTTACTGTATCGGAGGAAATACTTCGTCTAGCAAGGAGAGGGTGGAAAAGAAAGACGATAAGAACAAGTCCATCACTTTCAAGGCTCTGGATGGAGAGGTCATGAAGGATTTCAAGAGCGTCATCTCCATCCTTGAAGTGAGTGCAAAGGATGACGGCAGCCTGGTGAAATGGACTTTGGAATATGAGAAGTCAAATGAGAAACTCCTACCTCCAGATGCTTACCTCAGCCTTGTAATTAGTATGAGTAAAGAAATCGACGCTTACCTTCTCAAGGCATAA 456 0.4539 MAQIDKMETHVEKKSPANEFYEVFSSKAHLIPKACPDKIKSIEVVEGDWKSVGSVKLWTYCIGGNTSSSKERVEKKDDKNKSITFKALDGEVMKDFKSVISILEVSAKDDGSLVKWTLEYEKSNEKLLPPDAYLSLVISMSKEIDAYLLKA* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0499 151 Pfam Pathogenesis-related protein Bet v 1 family 4 150 IPR000916 GO:0006952
Vvi1g0499 151 Gene3D - 1 151 IPR023393 -
Vvi1g0499 151 CDD Bet_v1-like 6 149 - -
Vvi1g0499 151 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi1g0499 151 PRINTS Major pollen allergen Bet V1 signature 4 24 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi1g0499 151 PRINTS Major pollen allergen Bet V1 signature 67 86 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi1g0499 151 PRINTS Major pollen allergen Bet V1 signature 140 150 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi1g0499 151 PRINTS Major pollen allergen Bet V1 signature 51 60 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi1g0499 151 SMART Bet_v_1_2 2 151 IPR000916 GO:0006952
Vvi1g0499 151 PANTHER POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORT SUPERFAMILY PROTEIN 1 151 - -
Vvi1g0499 151 SUPERFAMILY Bet v1-like 7 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0499 Vvi-Chr1 4740067 4740786 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0499 - - vvi:100266230 300.056