Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0180 | ATGGTGTTACGTCTTCTTCTTCATCGGTTTCATGTACTGCCTCAGAAATTGCCAGCATCGTCAATCTTGAGTAGCGTCTTCCTCTCCCAGCTACACCCTACATTCAGTCTCAGACCACACTGTTACATTCACGATGAACCCTCTACTTCTTCATCATCTCAATCCCAATCACACTCACAATCCGTTGTGAGAACAATCTGTTCCTTGGTCTGTCAATCTTATTACCAGCAAACCCATGTCAGATTCACCCCTCCAAAGCTGCACCTCCCATTAGACTCCGAGTCTCTGACCCATGACCAGGCGATTACGGTCGTTGCTTCGCTGGCTGATGAAGCTGGTTCCATGGTGGCCTTGAGTTTCTTGTACTGGGCAATTGGGTTTCCTAAATTCCGGCATTTCATGCGCCTTTACATAGTTTCAGCCACCGCTTTGATTGGTAACAAGAATTTGGAGAGAGCCAATGAGGTGATGCAGTGTATGGTGATGAATTTTGCTGAAAATGGAAAATTGAAGGAGGCTGTTAACATGGTGGTGGAGATGCAAAATCAGGGCTTGGTTCCAAGTACCCAAACACTTAATTGTGTTCTGGATGTTGCAGTGGGAATGGGGTTGGTTGAAATTGCAGAGAATATGTTCGTTGAAATGTGTCAAAGAGGGGTGTCTCCTGATTGTGTAAGTTTCAAGTTAATGGTTGTTGCTTGCTGTAACATGGGTAGGGTTTTAGAGGCAGAGAGGTGGTTGAATGCGATGGTTGAAAGAGGGTTTATAGTCGATAACGCGACTTGTACCTTGATCATTGATGCATTCTGCCAAAAGGGTTATGTGAATAGAGTTGTTGGGTACTTTTGGAAGATGGTTGAGATGGGTTTGGCTCCGAATGTGATAAATTTCACTGCTCTGATTAATGGGTTGTGCAAGCAAGGAAGCATCAAGCAGGCGTTTGAGTTGTTGGAGGAGATGGTTCGGAGAGGCTGGAAGCCTAATGTGTATACCCACACAACATTGATTGATGGGTTGTGCAAGAAGGGGTGGACCGAAAAGGCATTTAGGCTGTTTCTTAAGCTCGTTAGGAGCGACGGTTACAAGCCAAATGTGCATACCTACACTGCTATGATCAATGGATATTGCAAGGAGGACAAGTTGAATCGGGCAGAGATGCTGCTGAGTAGAATGCAGGAACAGGGATTGGTTCCCAACACGAACACATACACTACTCTCATTGATGGGCATTGTAAAGTGGGCAATTTCGTTCGAGCATATGAATTGATGGATCTAATGGGCAAGGAAGGTTTCTCTCCCAATATCTATACATATAATGCAATCATTGATGGCCTTTGTAAGAAGGGAAGTCTTGATGAGGCTTATAGGCTGCTTAATAAGGTCTCTGTTCATGGCCTCCAAGCTGATGGAGTCACATATACCATTCTCATGTCTGTACATTGCAGGCAGGCTGATACCAACCGATCTCTGGTGTTTTTCAATAAGATGCTCAAAGTTGGCTTCACGCCTGACATACATTCCTATACAACATTGATTTCCACCTTCTGTAGGCAAAAACAGATGAAAGAAAGCGAGAGACTCTTTGAGGAAGCTGTCAGTCTTGGCTTGATCCCCACCAAGAAAACATACACATCCATGATATGTGGATACTGCAGATATGGGAATACAAGCTTGGCAGTGAAGCTGTTCCAAAGAATGAGTAACCATGGCTGTGCTCCTGATAGTATAACTTATGGTGCTCTGATCAGTGGACTCTGCAAAGAGTCCAAGCTTGATGATGCTCGAAACCTCTACGATGCCATGATGGACAAGGGCCTGTCGCCATGTGAAGTTACACGACTGACGCTAGCTTATGAGTACTGCAAGAAGGATGATTCCTCTACTGCCATCAATGTCTTGGACCGGTTAGAGAAGAGGCAGTGGATAAGAACGGTGAACACCTTGGTCAGGAAGCTTTGCAGTGAGGGGAAATTAGACATGGCAGCATTGTTCTTTCACAAGTTACTGGACAAAGAGCCAAATGTGAATCGAGTAACCCTGTTAGGGTTCATGAACAAATGCTATGAAAGCAACAAATATGGTCTTGTCTCCGAGTTGTCTGAGAGGATTTGTGAGGGAATTGGTTAG | 2127 | 0.4471 | MVLRLLLHRFHVLPQKLPASSILSSVFLSQLHPTFSLRPHCYIHDEPSTSSSSQSQSHSQSVVRTICSLVCQSYYQQTHVRFTPPKLHLPLDSESLTHDQAITVVASLADEAGSMVALSFLYWAIGFPKFRHFMRLYIVSATALIGNKNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFFHKLLDKEPNVNRVTLLGFMNKCYESNKYGLVSELSERICEGIG* | 709 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0180 | 708 | Pfam | PPR repeat family | 363 | 412 | IPR002885 | - | |
| Vvi1g0180 | 708 | Pfam | PPR repeat family | 433 | 482 | IPR002885 | - | |
| Vvi1g0180 | 708 | Pfam | PPR repeat family | 292 | 341 | IPR002885 | - | |
| Vvi1g0180 | 708 | Pfam | PPR repeat family | 187 | 236 | IPR002885 | - | |
| Vvi1g0180 | 708 | Pfam | PPR repeat family | 542 | 587 | IPR002885 | - | |
| Vvi1g0180 | 708 | Pfam | PPR repeat | 500 | 530 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 574 | 608 | IPR002885 | - | |
| Vvi1g0180 | 708 | SUPERFAMILY | HCP-like | 340 | 571 | - | - | |
| Vvi1g0180 | 708 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 297 | 532 | - | - | |
| Vvi1g0180 | 708 | Pfam | PPR repeat | 261 | 290 | IPR002885 | - | |
| Vvi1g0180 | 708 | Pfam | PPR repeat | 159 | 185 | IPR002885 | - | |
| Vvi1g0180 | 708 | Pfam | PPR repeat | 644 | 670 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 364 | 398 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 539 | 573 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 504 | 538 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 258 | 292 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 399 | 433 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 293 | 327 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 469 | 503 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 188 | 222 | IPR002885 | - | |
| Vvi1g0180 | 708 | Gene3D | Tetratricopeptide repeat domain | 358 | 488 | IPR011990 | GO:0005515 | |
| Vvi1g0180 | 708 | Gene3D | Tetratricopeptide repeat domain | 142 | 283 | IPR011990 | GO:0005515 | |
| Vvi1g0180 | 708 | Gene3D | Tetratricopeptide repeat domain | 489 | 642 | IPR011990 | GO:0005515 | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 223 | 257 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 328 | 363 | IPR002885 | - | |
| Vvi1g0180 | 708 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 434 | 468 | IPR002885 | - | |
| Vvi1g0180 | 708 | Gene3D | Tetratricopeptide repeat domain | 284 | 357 | IPR011990 | GO:0005515 | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 471 | 505 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 402 | 435 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 226 | 258 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 366 | 400 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 542 | 575 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 159 | 188 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 436 | 469 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 506 | 539 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 297 | 329 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 330 | 365 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 261 | 294 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 191 | 224 | IPR002885 | - | |
| Vvi1g0180 | 708 | NCBIfam | pentatricopeptide repeat | 576 | 608 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0180 | 355 | 702 | Miscellaneous Gene Families | AT4G11690 | 26.250 | 5.07e-41 | 155 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g0180 | - | - | vvi:100854972 | 1419.83 |