Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0172 ATGGCGGTGTTGTTGGAGGAGATAGCGCAGTCGGTAGAGATATGGTTGAAGCTGATTAAGAAACCTCAGCCGTACGTTGACCCCAATCTTGACCCGGTTCTGTTGGTGCCCGGCATCGCCGGTTCGATCCTGAAAGCCGTCGACGACAATGGTCGCGGCGAGCGGGTTTGGGTCCGGATAATCGGTGCCGATTACAAGTTCCGGACTAAGCTTTGGTCGCGATTTGACCCCTCTACTGGTCAAACAGTGTCTTTAGATCCAAAAACCCATATTGTGGTCCCTGAAGAGAGATATGGATTGCATGCAATTGATGTCTTGGATCCTGAAATGATTATTGGGCGTGATTGTGTTTATTATTTCCATGACATGATAGTTGAAATGATGAAATGGGGTTTTCAAGAGGGAAAAACACTATTTGGTTTTGGTTATGATTTCCGCCAAAGTAACAGGTTTCAGGAAACACTAGAGCGCTTTGCTGCGAAACTGGAGGCTGTGTACACCGCCTCAGGAGGAAAAAAAATAAACATAATAAGTCATTCTATGGGGGGTCTACTTGTGAAATGTTTCATGAGTTTACACACTGATATCTTTGAGAAGTATGTGCAGAACTGGATAGCAATTGCTGCACCATTCCAGGGTGCACCTGGATATATCTCATCGACATTTCTGAATGGAATGTCATTTGTGGAAGGTTGGGAACAGAATTTTTTTATATCAAAATGGAGCATGCACCAGCTGCTTATTGAATGTCCATCAATATATGAATTGATGGCTTGTCCGGATTTTCAATGGGAACACAATCCACTTTTGGAAATTTGGAGAGAGAAGCATGATAAGGATGGTAACTCTAACATTGTTCTGGAGTCTTATTCCCCAGAAGAAAGTGTTCCAATTTTTAAGGAAGCTCTTTCCAGTAATACGGTTAATTATGATGGATTGGACATTCCTCTACCTTTCAATTTAGAGATCTTGCAATGGGCTTGTGAAACACGCAAGATCTTATCTTGTGCTAAGGTTCCTTCTCAAGTTAAATTTTACAATATATATGGGATGAACCTCAAGACGCCTCATAGTGTTTGTTATGGAAGTGTGGAAGAACCTGTTACAGATCTAGAGCAATTAAAATTTGTCCAGGTCATTACCAGTTTCTGA 1152 0.4193 MAVLLEEIAQSVEIWLKLIKKPQPYVDPNLDPVLLVPGIAGSILKAVDDNGRGERVWVRIIGADYKFRTKLWSRFDPSTGQTVSLDPKTHIVVPEERYGLHAIDVLDPEMIIGRDCVYYFHDMIVEMMKWGFQEGKTLFGFGYDFRQSNRFQETLERFAAKLEAVYTASGGKKINIISHSMGGLLVKCFMSLHTDIFEKYVQNWIAIAAPFQGAPGYISSTFLNGMSFVEGWEQNFFISKWSMHQLLIECPSIYELMACPDFQWEHNPLLEIWREKHDKDGNSNIVLESYSPEESVPIFKEALSSNTVNYDGLDIPLPFNLEILQWACETRKILSCAKVPSQVKFYNIYGMNLKTPHSVCYGSVEEPVTDLEQLKFVQVITSF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0172 383 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 19 367 - -
Vvi1g0172 383 SUPERFAMILY alpha/beta-Hydrolases 28 351 IPR029058 -
Vvi1g0172 383 Gene3D alpha/beta hydrolase 80 380 IPR029058 -
Vvi1g0172 383 Pfam Lecithin:cholesterol acyltransferase 97 258 IPR003386 GO:0006629|GO:0008374
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0172 Vvi-Chr1 1591558 1597664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0172 31 374 Acyl Lipid Metabolism Gene Families AT3G03310 51.576 1.07e-128 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0172 K22389 - vvi:100255965 783.482