Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0858 ATGGAGCGCCGGATAAAGCTACTGCGAGAGGATAGTGAGTTGCAGAAACTTCATAAGCAATTTGTACTCAGTGGTGTCTTGACAGAAGCTGAATTTTGGGCAACTAGGAAGAAATTGCTGGATGGGAATACTAGTAGAACTTCAAAACAACGTGTGGGATTCAAAAGTGCCATGATATCGGATCTTAAACCATTGACTGATGGTCGGACAAACAGAGTTACATTTAACTTGACACCAGAAATAATTCATCAGATTTTTGCTGAGAAACCAGCTGTTCATCAGGCATTTTTGAATTTTGTTCCCAATAAGATGACAGAAAAGGACTTCTGGAACAAATATTGTAGAGCCGAATACCTTCATTGTACGAGAAACACAGTTGCTGCTGCAGCAGAGGCTGCTGAAGATGAGGAACTTGCTGTTTTCTTGAAGCATGATGATATATTGGCCAATGAAGCTCGGCGGAAGATCAGACGGGTTGATCCAACTTTGGACATGGAGGCTGACCAGGGGGATGATTATATGCATCTTCCGGATCATGGTATCTTTCGTGATGGTAGCAAGGAAATTATTGACCCACAATATGAGCAATATAGAAGGACTCTTTCACAAGACCTTAATCGGCATGCTGCAGTTGTTCTTGAAGGAAGACCTATAGATGTGGAGTTGGAAGACACAAGAACTGTAGCAGAGGCTCTTGCCAAGTCGAAACGGGTTGAGGCAGCTAATGAAAAATCTGATGGGAGTGTAACCCGGGAAAGATTAGAAAGGATTTCTCGGATGACTGAGATTGAGGATCTTCAGGCACCTCGTGACCTTCCATTTGCAGCACTTTGCATTAAGGATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTGGGAGACACCCTAGCCGGATCAAAGCAAATAAAATGCAGCCTGAGCACCCAGGAAGCATATGGTTCTTTGAGAGGATTTATTTCTGAGATCAAATCTGTAGGATTAAGTGATCCCATAGTTAAACCTGATATTGCTCTTAAGGTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGGAAGAATCCTCAAGAAAGCGTTCTGGATAGATTGCCAATCATTACTAAAGAGGAATTGCTACATCATTGGACCTCAATTCAAGAATTACTGAGACATTTCTGGTCGTCATATCCAATTACAACTACATATCTTTATACTAAGGCAAGCAGGCTAAAAGATGCCATGTCTCAAATTTATCCAAAGCTACAGGAGATAAAGGAATCTGTGCAGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAGTTGGTCTGA 1350 0.4163 MERRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQLV* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0858 449 Pfam BSD domain 75 124 IPR005607 -
Vvi19g0858 449 SUPERFAMILY BSD domain-like 73 122 IPR035925 -
Vvi19g0858 449 ProSiteProfiles BSD domain profile. 69 121 IPR005607 -
Vvi19g0858 449 Gene3D - 1 37 - -
Vvi19g0858 449 ProSiteProfiles BSD domain profile. 1 44 IPR005607 -
Vvi19g0858 449 SUPERFAMILY BSD domain-like 1 40 IPR035925 -
Vvi19g0858 449 PANTHER TRANSCRIPTION INITIATION FACTOR IIH-RELATED 1 448 IPR027079 GO:0000439|GO:0006289|GO:0006351
Vvi19g0858 449 SMART wurzfinal6 2 44 IPR005607 -
Vvi19g0858 449 SMART wurzfinal6 69 121 IPR005607 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0858 K03141 - vvi:100249755 879.396