Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0857 ATGGCGTCCCCTGGAAATCCAAACCAAGCGGCAGCGTTTGATATGCACAAACTCTTCAAACCCACAAGCCCTAGCCCTCAAAACCCTAACAATCTCAATTCTTCTTCTCCATTTCCACCCTCCTCTTATCCTCCACCGCCTTCTGCCTCTTACCCTCCGCCCTCTGGCCCTTATTCCTACCCTCCTCAAACCTCCCCATTTCACCATCAACATCACTACCATATCCCCTACCCTCAAGAGCAACTCTCTAACATGCACCACCAGCGCTCAGTTTCTTATCCTACTCCTCTTCTTCAACCTCCGCCTCACCACCTTGCTCCTCCAAACCCTAACCCCGGTGCTCGATTGATGGCGCTCCTCAGCCCTCCGACCACCAATCTTGATTTGACGCAGCAGCCCGCCATGCCGGTGGCTCCAATTCAGCAGCCAGCTTCTGGGGTTTCCGAATTTGCGGCCTCTCCCAATGTTCCGATCCTGCCTTCTGCCCCTCCGCCAGGGATACCGAATCCTGCTGTTGTCACTGCCAGCCCTGTGCGGATGCCTAGCAGTAAGTTGCCCAAAGGGCGGAGATTGGTGGGTGAGAATGTGGTGTATGATGTGGATGTTAGGCTGCAAGGCGAGGTGCAGCCTCAGCTTGAGGTCACTCCGATCACCAAGTATGTTTCCGATCCTGGCCTCGTTTTAGGACGACAGATTGCTGTCAATAAAACCTATATATGCTACGGGTTGAAATTGGGGGCGATTCGGGTGCTTAATATAAACACCGCACTGAGATATTTGCTCAGAGGTCATGCTCAGAGGGTGACTGACATGGCTTTCTTTGCTGAGGATGTTCATCTTTTAGCTAGTGCAAGCATCAATGGACGTGTTTATGTATGGAAGATTTCTGAAGGTCCAGATGAGGAAGATAAGCCACAAATTACAGGAAAGATTGTGATTGCCATTCAAATAGTAGGAGAGGGGGAATCTGTAAATCCAAGAGTTTGCTGGCACTGTCACAAACAAGAAGTTTTGGTTGTTGGGATTGGAAAACGTATTCTGAAGATTGACACTACGAAAGTTGGAAAGGGTGAATCTTATTCTGCAGATGAACCTCTCAACTGTCCAGTAGACAAGCTTATTGATGGGGTCCAATTTATTGGGAAACATGATGGAGAAGTGACTGATCTGTCGATGTGCCAATGGATGACCACTCGTTTAGTTTCTGCTTCAACGGATGGCACGATAAAGATCTGGGAAGACCGCAAGACACTTCCTCTTCTGGTACTGAGGCCACATGATGGCCATCCTGTCAATTCGGCTACATTCCTGACTGCTCCTCACCGCCCGGATCACATTATTCTCATAACTGCGGGCCCACTGAATAGGGAAGTGAAGCTATGGGCCACAGAAAGTGAAGAAGGCTGGCTGCTGCCTAGTGATGCAGAATCATGGCATTGTACTCAGACGTTGGACTTGAAGAGTTCAGCTGAACCTTGTGTTGAGGAGGCGTTCTTTAATCAAGTGTTAGCATTGTCTAAATCTGGCCTTCTCTTACTTGCAAATGCCAAAAAGAATGCTATATATGCTGTACATTTGGAGTATGGTTCTAATCCTGCAGCAACCTGCATGGACTATATAGCAGAGTTTACTGTCACTATGCCTATTTTAAGTTTTACTGGGACAAGTGAATTATTACATGGTGAACATGTTGTTCAGGTATATTGTTTCCAGACACAAGCTATTCAGCAGTATGCTTTGAACTTATCCCAGTGTTTGCCACTGTTGCCGGAAAATGTAGGGGTAGAGAAGTCTGACTCTGGTGTTTCACATGATGTGACTAATGCAGAAGGTTTTGGCACCTTAGAGCCTCCTGGAAGTAAACTTACTGAGATGCCTTTAACTAGTTCTGCACTCAAATCAACTGTGCTAATAAGTAGCTCTGAGAGTGAACCTGGTGTGAGATTTCCTGTGAGCTCTGCTTCTATTGAGTCTGCCACTTTGAGTCCAGAATCTAAACCTGGTGCTTTACCTTTGGTCAATAATGACAATGATATTGTTTCAATTCCATCACCACCTCTTCCTTTGAGTCCAAGGCTGTCAGGAAAGTTGTCTGGTTTTAGAAGTCCAACAAATAACTTTGAACCAGGTCCCACCCTTGGCGATCGTGGCGATAGTGACCAAGTAGTTATTGATTATTCAGTTGACAGGCAAATAGATACTGTTTGTACAACCCTCTCTGATTTGCCTTCTTTAGATGATGATTCAAGGAATGATGAAAACAAAGTTGCACAAGATGACAGTTCTACCATTCTAAATCCTACTGTCATGTTCAAACATCCAACACATCTGATTACTCCTTCTGAGATATTCATGGCCGTTTCATCTGCTGAAGCTACCCATAGCACTGAGAGTAAGAGTGAGGGAGAGGCCAATATTCAAGATGTCTCTATCAACAGTGATGTGAGCAATGTTGAGGTGGAGGTTAAAGTTGTGGGTGAAACAGGATCAACTCAGAATGATGAATTTGGCTTGCAAGGAGAATCTCAGAATCTTGCTTTAGAAAATAAGGAGAAAGCCTTTTGCTCCCAGGCTTCAGATCTTGGAATTGAGATGGCCAAAGAGTGCAGTGCATTATCATCTGAAACTTATGTTGTGGAGGAATCTCGGCAAGTTGATGGTGCTAGAATGGAGGCATTGGCCCGGCCTTCAAATGCAGGTGAGGATGAAGTGATTGATGCTATAAAAGATGTGTCTGGAAAAGTAGCTGATTCCGCCATGCCTACAACAGTTCCTCAATCACCAGCACCAACTACAAAAGGGAAAAAGCATAAGGGGAAAAACTCTCAAGTATCCCCATCTCCAACTGCTTTCAATTCTACCGATTCTTCCAATGAGCCAGGTGCAAATTTGAGTAGCCCTTCAGTGGAAGCTGCTGTTCCCCATATTCTGGCTATGCAGGAGACACTTAATCAGCTTTTGTCCATGCAAAAAGAAATGCAGAAGCAGATATCAGTATTAGTTGCTGTCCCAGTTACCAAAGAAGGTAGAAGATTAGAGGCTACTCTAGGACGGAGTATGGAGAAATCTGTCAAGGCCAATGCTGATGCTTTGTGGGCTAATATCCTAGAAGAGAATGCGAAACATGAGAAGTTAGTACGAGATCGTACACAGCAGATAACAAGTTTGATTACTAATAGTTTGAACAAGGACTTGCCAGCCATATTGGAGAAAACAGTGAAAAAGGAAATGGCTGCAGTTGTACCAGCTGTAGCTCGCACAATTACGCCTGTTGTTGAGAAAACAATTTCCTCGGCTATCACAGAGACCTTCCAGAGAGGAGTTGGTGATAAGGCATTGAATCAAGTGGAGAAATCAATTAATTCAAAACTTGAAGCCACTGTTGCTAGGCAAATTCAAGTACAGTTTCAAACTTCTGGCAAACAAGCTCTTCAGGATGCATTAAAATCCAATCTGGAAGCTTCAGTGGTCCCAGCGTTTGAGATGTCATGCAAAGCAATGTTTGACCAAGTTGACTCTACATTTCAAAAAGGAATGGTTGAGCATGCCACTACAGTTCAGCAGCAATTTGAATCCACCCATTCTCCTTTAGCACTTGCTTTAAGGGATGCCATTAATTCAGCATCATCAATGACTCAAACTTTAAGTGGAGAATTGGCTGATGGTCAACGAAAGCTCTTAGCTCTTGCAGCTGCAGGGGCAAACCCTACATCAGTGAATCCCCTGGTTACTCAACTGAGTAATGGACCTTTGGGTGGTCTCCATGACAAGGTTGAGATGCCTTTGGATCCAACAAAGGAGCTATCTAGATTGATATCTGAACGCAAATATGAAGAGGCTTTCAATGGAGCCCTACAACGAAGTGATGTCTCTATCGTGTCATGGTTGTGTTCTCAGGTTGATCTGCAAGGGATTTTGTCAATGGTTCCTCTCCCATTGAGCCAAGGAGTACTGCTCTCCCTTCTGCAGCAGTTGGCCTGTGACATCAACAAGGATACACCCCGAAAATTGGGATGGATGACAGATGTGGCAGTAGTCATAAACCCAGGAGACCCCATGATCGCAATGCATGTGCGGCCCATCTTCGATCAGGTCTATCAGATACTAAACCATCATCGATCCCTACCCACCACAACCAGTTCCCAAGGTCAAAGCATCCGCCTTCTTATGCATGTCATCAACTCCATGCTGATGACCTGTAAATGA 4206 0.4527 MASPGNPNQAAAFDMHKLFKPTSPSPQNPNNLNSSSPFPPSSYPPPPSASYPPPSGPYSYPPQTSPFHHQHHYHIPYPQEQLSNMHHQRSVSYPTPLLQPPPHHLAPPNPNPGARLMALLSPPTTNLDLTQQPAMPVAPIQQPASGVSEFAASPNVPILPSAPPPGIPNPAVVTASPVRMPSSKLPKGRRLVGENVVYDVDVRLQGEVQPQLEVTPITKYVSDPGLVLGRQIAVNKTYICYGLKLGAIRVLNINTALRYLLRGHAQRVTDMAFFAEDVHLLASASINGRVYVWKISEGPDEEDKPQITGKIVIAIQIVGEGESVNPRVCWHCHKQEVLVVGIGKRILKIDTTKVGKGESYSADEPLNCPVDKLIDGVQFIGKHDGEVTDLSMCQWMTTRLVSASTDGTIKIWEDRKTLPLLVLRPHDGHPVNSATFLTAPHRPDHIILITAGPLNREVKLWATESEEGWLLPSDAESWHCTQTLDLKSSAEPCVEEAFFNQVLALSKSGLLLLANAKKNAIYAVHLEYGSNPAATCMDYIAEFTVTMPILSFTGTSELLHGEHVVQVYCFQTQAIQQYALNLSQCLPLLPENVGVEKSDSGVSHDVTNAEGFGTLEPPGSKLTEMPLTSSALKSTVLISSSESEPGVRFPVSSASIESATLSPESKPGALPLVNNDNDIVSIPSPPLPLSPRLSGKLSGFRSPTNNFEPGPTLGDRGDSDQVVIDYSVDRQIDTVCTTLSDLPSLDDDSRNDENKVAQDDSSTILNPTVMFKHPTHLITPSEIFMAVSSAEATHSTESKSEGEANIQDVSINSDVSNVEVEVKVVGETGSTQNDEFGLQGESQNLALENKEKAFCSQASDLGIEMAKECSALSSETYVVEESRQVDGARMEALARPSNAGEDEVIDAIKDVSGKVADSAMPTTVPQSPAPTTKGKKHKGKNSQVSPSPTAFNSTDSSNEPGANLSSPSVEAAVPHILAMQETLNQLLSMQKEMQKQISVLVAVPVTKEGRRLEATLGRSMEKSVKANADALWANILEENAKHEKLVRDRTQQITSLITNSLNKDLPAILEKTVKKEMAAVVPAVARTITPVVEKTISSAITETFQRGVGDKALNQVEKSINSKLEATVARQIQVQFQTSGKQALQDALKSNLEASVVPAFEMSCKAMFDQVDSTFQKGMVEHATTVQQQFESTHSPLALALRDAINSASSMTQTLSGELADGQRKLLALAAAGANPTSVNPLVTQLSNGPLGGLHDKVEMPLDPTKELSRLISERKYEEAFNGALQRSDVSIVSWLCSQVDLQGILSMVPLPLSQGVLLSLLQQLACDINKDTPRKLGWMTDVAVVINPGDPMIAMHVRPIFDQVYQILNHHRSLPTTTSSQGQSIRLLMHVINSMLMTCK* 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0857 1401 MobiDBLite consensus disorder prediction 21 37 - -
Vvi19g0857 1401 FunFam enhancer of mRNA-decapping protein 4 213 527 - -
Vvi19g0857 1401 SUPERFAMILY WD40 repeat-like 233 526 IPR036322 GO:0005515
Vvi19g0857 1401 Gene3D - 226 573 IPR015943 GO:0005515
Vvi19g0857 1401 MobiDBLite consensus disorder prediction 740 760 - -
Vvi19g0857 1401 MobiDBLite consensus disorder prediction 1 71 - -
Vvi19g0857 1401 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 213 527 IPR032401 -
Vvi19g0857 1401 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 413 IPR001680 GO:0005515
Vvi19g0857 1401 MobiDBLite consensus disorder prediction 38 61 - -
Vvi19g0857 1401 Gene3D - 1313 1400 IPR044938 -
Vvi19g0857 1401 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 1 1399 IPR045152 GO:0031087
Vvi19g0857 1401 MobiDBLite consensus disorder prediction 941 965 - -
Vvi19g0857 1401 MobiDBLite consensus disorder prediction 916 967 - -
Vvi19g0857 1401 MobiDBLite consensus disorder prediction 599 621 - -
Vvi19g0857 1401 MobiDBLite consensus disorder prediction 89 109 - -
Vvi19g0857 1401 MobiDBLite consensus disorder prediction 95 109 - -
Vvi19g0857 1401 SMART WD40_4 373 413 IPR001680 GO:0005515
Vvi19g0857 1401 SMART WD40_4 254 294 IPR001680 GO:0005515
Vvi19g0857 1401 FunFam Enhancer of mRNA-decapping protein 4 1313 1399 - -
Vvi19g0857 1401 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 303 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0857 Vvi-Chr19 9659584 9673344 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0857 K12616 - vvi:100259985 2544.23