Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0852 ATGAAGCTCGTCAGGTTTTTGATGAAGCTCAACAACGAGACTGTGTCAATTGAGCTCAAGAACGGTACCGTTGTTCATGGCACCATCACAGGTGTGGATATTAGTATGAACACACATTTGAAGACTGTGAAACTGACTCTGAAGGGGAAAAATCCAGTGACTATGGATCACCTGAGTGTGAGGGGCAACAATATTCGGTATTATATACTTCCCGACAGCATAAATCTGGAGACATTGCTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACTGCTGGACGGCCTATGGGGCGTGGTCGGGGCCGTGGGCGTGGACGTGGACGTGGTCGAGGCCGCTAG 345 0.5043 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSINLETLLVEETPRVKPKKPTAGRPMGRGRGRGRGRGRGRGR* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0852 114 Pfam LSM domain 5 69 IPR001163 -
Vvi19g0852 114 MobiDBLite consensus disorder prediction 93 114 - -
Vvi19g0852 114 MobiDBLite consensus disorder prediction 83 114 - -
Vvi19g0852 114 Gene3D - 1 85 - -
Vvi19g0852 114 ProSiteProfiles Sm domain profile. 2 74 IPR047575 GO:0003723
Vvi19g0852 114 SMART Sm3 5 70 IPR001163 -
Vvi19g0852 114 FunFam Small nuclear ribonucleoprotein Sm D1 1 82 - -
Vvi19g0852 114 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 4 113 IPR027141 GO:0006396
Vvi19g0852 114 SUPERFAMILY Sm-like ribonucleoproteins 4 113 IPR010920 -
Vvi19g0852 114 CDD Sm_D1 2 93 IPR034102 GO:0000387
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0852 Vvi-Chr19 9531133 9538911 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0852 K11087 - vvi:100258386 197.208