Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0842 ATGGAGGAGACAATACCCTTCAAGAATCTCCATAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTGCACTCGGTGGCTTGGAATTGTACGGGCACGAAGCTAGCCTCCGGTTCTGTGGATCAAACGGCTCGAATTTGGCTCATTGAGCAACATGGGCATGGCAAGGTTAAAGATATTGAATTGAAGGGGCATACTGATAGTGTGGATCAGCTGTGTTGGGACCCCAAGCATGCTGATTTAATTGCAACTGCTTCCGGCGACAAGACTGTTCGTCTGTGGGATGCTCGGAGTGGAAAATGTACGCAGCAAGCAGAACTCAGTGGGGAGAATATCAATATTACCTACAAACCCGATGGGACACATATAGCTGTTGGGAACCGGGATGATGAATTAACAATACTGGATGTTCGCAAATTTAAGCCAATCCATAGGCGCAAATTCAGTTATGAGGTAAATGAGATTGCCTGGAACATGACTGGAGAGATGTTTTTTTTGACGACTGGGAATGGTACTGTAGAAGTACTAGCATACCCAGCCCTTCGACCACTTGACACCCTTATGGCTCATACTGCTGGTTGCTATTGCATCGCAATTGATCCAATAGGAAGATACTTTGCTGTTGGAAGTGCTGATTCCTTAGTCAGCCTTTGGGATATCTCAGAGATGCTATGCGTGCGGACGTTTACAAAACTTGAATGGCCTGTCAGGACGATAAGTTTCAATCACACAGGAGAGTATATCGCATCTGCCAGTGAAGATCTTTTCATTGATATCTCAAATGTTCACACAGGGCGAACAGTCCACCAGATTCCATGCCGGGCTGCCATGAACAGTGTGGAATGGAATCCAAAACACAATTTGCTTGCATATGCTGGAGATGACAAGAACAAGTATCAAGCTGATGAAGGCGTTTTCCGAATATTTGGATTTGAAAGTGCCTGA 942 0.4533 MEETIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWLIEQHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCTQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPALRPLDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGVFRIFGFESA* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0842 313 Gene3D - 6 176 IPR015943 GO:0005515
Vvi19g0842 313 FunFam THO complex subunit 3 175 309 - -
Vvi19g0842 313 Pfam Anaphase-promoting complex subunit 4 WD40 domain 233 282 IPR024977 -
Vvi19g0842 313 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Vvi19g0842 313 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Vvi19g0842 313 Pfam WD domain, G-beta repeat 13 46 IPR001680 GO:0005515
Vvi19g0842 313 Pfam WD domain, G-beta repeat 182 218 IPR001680 GO:0005515
Vvi19g0842 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 46 IPR001680 GO:0005515
Vvi19g0842 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Vvi19g0842 313 FunFam THO complex subunit 3 1 165 - -
Vvi19g0842 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 46 - -
Vvi19g0842 313 CDD WD40 11 295 - -
Vvi19g0842 313 SMART WD40_4 54 94 IPR001680 GO:0005515
Vvi19g0842 313 SMART WD40_4 221 260 IPR001680 GO:0005515
Vvi19g0842 313 SMART WD40_4 138 176 IPR001680 GO:0005515
Vvi19g0842 313 SMART WD40_4 263 301 IPR001680 GO:0005515
Vvi19g0842 313 SMART WD40_4 8 47 IPR001680 GO:0005515
Vvi19g0842 313 SMART WD40_4 97 135 IPR001680 GO:0005515
Vvi19g0842 313 SMART WD40_4 179 218 IPR001680 GO:0005515
Vvi19g0842 313 SUPERFAMILY WD40 repeat-like 9 295 IPR036322 GO:0005515
Vvi19g0842 313 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Vvi19g0842 313 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Vvi19g0842 313 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Vvi19g0842 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Vvi19g0842 313 PANTHER THO COMPLEX SUBUNIT 3 THO3 3 310 IPR040132 GO:0006406
Vvi19g0842 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Vvi19g0842 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Vvi19g0842 313 Gene3D - 177 304 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0842 Vvi-Chr19 9387533 9391657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0842 148 309 Miscellaneous Gene Families AT5G08390 23.313 3.86e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0842 K12880 - vvi:100241262 653.284