Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0840 ATGGGAGGCGTGGTGGGAAAAGGCGATTCACCTAGAAAAGCCTGGGTACCAGAAACAAAGCTTGAGGCCAAAATGGTTGAAGCTATGCAGCGGAGGGCATCTGAAGGAAGCACCATGAAATCGTTCAACAGTATAATCTTGAAGTTCCCAAAAATTGATGAGAGTTTAAGGAACTGCAAAGCTATTTTTCAGCAATTTGATGAGGATTCAAATGGTGCAATAGATCATGAAGAACTGAAAAGATGTTTCCTTAAACTGGAGATTTCTTTTTCAGAGGAGGAAATCAACGATCTTTTTGAGGCATGTGATATCAATGAGGATATGGGAATGAAGTTCAATGAGTTCATTGTACTTCTCTGCCTTGTCTATCTTCTCAAGGAGGATCCTGCTGCCCTTCAGGCCGTATCCAAAAAATCACGGATGGGGATGCCAAATCTGGAGGCAACCTTTGAAACACTGGTTGATGCATTTGTGTTCCTGGACAAGAATAAGGATGGTTATGTGAGCAAGAGCGAGATGGTGCATGCAATAAATGAAACAACTGCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTCGAGGAGATGGATTGGGATAAAAATGGAATGGTGAACTTCAAGGAGTTTCTTTTTGCTTTCACCCGTTGGGTTGGGATTGACGATATTGAGGATGAAGAAGAAGAAGGTGAAGAGAAAGTTTGA 708 0.4209 MGGVVGKGDSPRKAWVPETKLEAKMVEAMQRRASEGSTMKSFNSIILKFPKIDESLRNCKAIFQQFDEDSNGAIDHEELKRCFLKLEISFSEEEINDLFEACDINEDMGMKFNEFIVLLCLVYLLKEDPAALQAVSKKSRMGMPNLEATFETLVDAFVFLDKNKDGYVSKSEMVHAINETTAGERSSGRIAMKRFEEMDWDKNGMVNFKEFLFAFTRWVGIDDIEDEEEEGEEKV* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0840 235 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Vvi19g0840 235 Coils Coil 221 235 - -
Vvi19g0840 235 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Vvi19g0840 235 FunFam probable calcium-binding protein CML21 17 218 - -
Vvi19g0840 235 SUPERFAMILY EF-hand 54 223 IPR011992 -
Vvi19g0840 235 CDD EFh 59 119 IPR002048 GO:0005509
Vvi19g0840 235 SMART efh_1 94 122 IPR002048 GO:0005509
Vvi19g0840 235 SMART efh_1 58 86 IPR002048 GO:0005509
Vvi19g0840 235 SMART efh_1 190 218 IPR002048 GO:0005509
Vvi19g0840 235 SMART efh_1 152 180 IPR002048 GO:0005509
Vvi19g0840 235 Pfam EF-hand domain pair 60 117 IPR002048 GO:0005509
Vvi19g0840 235 Pfam EF-hand domain pair 150 215 IPR002048 GO:0005509
Vvi19g0840 235 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Vvi19g0840 235 ProSiteProfiles EF-hand calcium-binding domain profile. 186 221 IPR002048 GO:0005509
Vvi19g0840 235 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
Vvi19g0840 235 Gene3D - 17 218 - -
Vvi19g0840 235 PANTHER TROPONIN 20 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0840 Vvi-Chr19 9373975 9376106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0840 1 221 EF-hand Containing Proteins AT4G26470 78.281 6.44e-125 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0840 K13448 - vvi:100256640 429.869