Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0835 ATGTCAGGACTAGAAGAAGGACTGGGGGCTCAAGATGAAATAAGAGAAAGAAGATCAGATTTGGAGAACTCAGAAGATGAGAGACGGAGATCAAAAATTGCCCATCTCAAGAAGAAGGCAATAAATGCTTCGAATAAGTTTACTCATTCTCTTAAGAAACGAGGAAAAAGGAAAATAGACTACAGAGTTCCTTCTGTTTCCATAGAGGATGTACGAGATGCAAAAGAGGAGAGTGCCGTTCATGAATTGCGTCAAAAACTCCTTGACAAGGATTTGTTGCCACCTAGGCATGATGACTATCATACTTTGCTGAGATTCTTGAAAGCTAGAGAATTTAACATTGAAAGAACGATCCAGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAACGGACACAATTCTGGAGGACTTTGAATTCAAAGAGCTGGAGGATGTCTTACAATACTACCCTCAAGGATACCATGGAGTTGATAAGGAAGGAAGGCCAGTTTACATTGAGAGACTTGGGAAAGCTCACCCCAGTAGGCTTATGCGTATCACCACAATAGATCGCTACTTAAAGTACCATGTCCAAGAGTTTGAAAAGGCTCTACTTGAGAAATTCCCTGCTTGTTCAATTGCAGCAAAGAGACGGATCTGTTCGACAACAACGATATTAGATGTACAGGGCTTGGGTATGAAAAATTTTACTCGAACTGCTGCAAATCTTGTGGCTGCCATGGCTAAGATAGACAATAATTACTACCCTGAGACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGGTGCTGGAGCCCAAATTCTTATGTAAACTTCTGGAAGTCATTGACTCAAGTCAACTGCCTGACTTCTTGGGTGGCTCTTGCACATGTGCTACTGATGGTGGGTGCCTGAGGTCTAATAAAGGTCCATGGAATGATCCTGAAATAATGAAGCTTGTGCATAATGCGGAATCAATATTTGTGAGGCAAATCACCAGAATAGTTAATGACCAACAGAAACTCGACTCATATATTCAGATACGCCCTCTGAAGGGGAGAGGTAGTGATACAATGACAGTAGAATCAGGATCAGATGTTGATGATCCTTGTTCTCCAACAGGACAAAGGAGCTCTTCATTTCCACGATTGGCCCCTGTTCATGAAGAAGCCAGGGCATCAGATCCCAATTCTTATTACAGCTGTGATGATCATTTTGGTCTGGTTGATGAAGCTACTGGCTACGATCAGGAAGTGGGACATACTCAGGGCCAATCGCTTAATGATATGGGAAATTCTTCTAGTGGGAAAATATCAAATTCAGGAGGTATTCCAGTCAACCGAAGGTCCAATACTGTCAAGGAAAAGGTGGAGAACAGGAATTTTCAGTTTTTGGCAAGAATGCTGATATCTTTCCTGGTTAGGCTGGTTGCATTTATTCGTAGTTTTCCCTTTGAATTTTGGAGAAGGCAGAGCAACATTTATCCATCTAATGTGATGGAAGACAACCAAAACAGCTGTTCAGGAGCTGACGAAACTGTCTACAAAGAAGACCCTATCCTTCCATGCATACAGCGCCTTCAGAGCATAGAGAAAAAATTTGAGGAACTTAGGAACAAGCCTGCTGAAATTCCTTTTGAAAAGGAGCAAATTCTTCTTGAATCTTTGGATAGAATCAAGTCTGTTGAGTTTGACCTTGAGAAAACAAAGAGAGTACTTCATGCTACAGTGATGAAGGAACTTGAGATTGCTGAGCTTCTGGAGAATTTACGACAGTCTAAGTTTCGACGAAGAAGGCTCTTCTGTTAA 1866 0.4148 MSGLEEGLGAQDEIRERRSDLENSEDERRRSKIAHLKKKAINASNKFTHSLKKRGKRKIDYRVPSVSIEDVRDAKEESAVHELRQKLLDKDLLPPRHDDYHTLLRFLKAREFNIERTIQMWEEMLNWRKEYGTDTILEDFEFKELEDVLQYYPQGYHGVDKEGRPVYIERLGKAHPSRLMRITTIDRYLKYHVQEFEKALLEKFPACSIAAKRRICSTTTILDVQGLGMKNFTRTAANLVAAMAKIDNNYYPETLHRMFVVNAGPGFKKMLWPAAQKFLDPKTISKIQVLEPKFLCKLLEVIDSSQLPDFLGGSCTCATDGGCLRSNKGPWNDPEIMKLVHNAESIFVRQITRIVNDQQKLDSYIQIRPLKGRGSDTMTVESGSDVDDPCSPTGQRSSSFPRLAPVHEEARASDPNSYYSCDDHFGLVDEATGYDQEVGHTQGQSLNDMGNSSSGKISNSGGIPVNRRSNTVKEKVENRNFQFLARMLISFLVRLVAFIRSFPFEFWRRQSNIYPSNVMEDNQNSCSGADETVYKEDPILPCIQRLQSIEKKFEELRNKPAEIPFEKEQILLESLDRIKSVEFDLEKTKRVLHATVMKELEIAELLENLRQSKFRRRRLFC* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0835 621 SUPERFAMILY CRAL/TRIO N-terminal domain 73 140 IPR036273 -
Vvi19g0835 621 SMART sec14_4 144 316 IPR001251 -
Vvi19g0835 621 SMART CRAL_TRIO_N_2 99 124 IPR011074 -
Vvi19g0835 621 MobiDBLite consensus disorder prediction 373 415 - -
Vvi19g0835 621 Pfam CRAL/TRIO, N-terminal domain 96 123 IPR011074 -
Vvi19g0835 621 Gene3D - 62 131 - -
Vvi19g0835 621 MobiDBLite consensus disorder prediction 440 466 - -
Vvi19g0835 621 CDD SEC14 145 313 IPR001251 -
Vvi19g0835 621 MobiDBLite consensus disorder prediction 9 32 - -
Vvi19g0835 621 Pfam CRAL/TRIO domain 150 313 IPR001251 -
Vvi19g0835 621 SUPERFAMILY CRAL/TRIO domain 144 340 IPR036865 -
Vvi19g0835 621 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 18 608 - -
Vvi19g0835 621 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 144 319 IPR001251 -
Vvi19g0835 621 Gene3D - 132 354 IPR036865 -
Vvi19g0835 621 MobiDBLite consensus disorder prediction 1 35 - -
Vvi19g0835 621 MobiDBLite consensus disorder prediction 377 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0835 Vvi-Chr19 9245492 9250307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0835 97 310 Acyl Lipid Metabolism Gene Families AT1G55840 31.081 5.18e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0835 - - vvi:100263435 1246.88