Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0828 ATGGCGGAGGTTGAAACGTTCGCTTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGATGGACAACCTGACCTCTTCATCCACATTGTCCCTGATAAGACAAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGGAACCAAAGAATTCATGGAAGCCCTGGCTGCTGGTGCTGATGTTAGCATGATTGGGCAGTTTGGTGTTGGGTTTTACTCAGCCTACCTGGTTGCTGAGAAGGTCATTGTAACCACCAAGCACAATGATGATGAGCAGTATGTATGGGAATCCCAGGCTGGTGGGTCATTCACTGTCACCAGGGACACATCTGGTGAGCGCCTTGGCAGGGGTACAAAGATCACTCTTCACCTTAAAGAGGACCAGCTCGAGTACCTTGAGGAGCGTCGAGTCAAGGATTTGATTAAGAAGCATTCTGAGTTCATAAGCTACCCCATCTCTCTCTGGATTGAGAAGACCACAGAAAAGGAAATTTCTGATGATGAGGATGAGGAAGACAAGAAGGATGAAGACAAGAAGGATGAAGAAGGAAAGGTAGAGGAGGTTGATGAAGAAAAGGAAAAGGAAGAGAAGAAAAAGAAGAAAATCAAGGAAGTCTCACATGAGTGGTCTTTAGTGAACAAGCAGAAACCTATCTGGATGAGGAAGCCTGAGGAAATCACAAAGGAAGAGTATTCTGCCTTCTATAAGAGCCTCACCAATGACTGGGAGGAGCACTTGGCTGTGAAGCACTTCTCAGTTGAGGGCCAGCTTGAGTTCAAGGCTATCCTCTTTGTCCCCAAGAGAGCGCCATTTGATCTCTTTGACACAAGGAAGAAGCCCAATAACATTAAGCTCTATGTTCGTCGGGTGTTCATCATGGACAACTGTGAGGAGCTAATCCCAGAGTATCTTGGCTTTGTGAAAGGTATTGTGGACTCTGAGGATCTTCCTCTAAACATCTCAAGAGAGATGCTGCAGCAGAACAAAATTCTCAAGGTCATCCGAAAGAACTTGGTCAAGAAATGCATTGAGCTCTTCTTTGAGATTGCTGAGAACAAGGATGACTACAACAAGTTCTATGAAGCTTTCTCTAAGAACCTCAAGCTTGGCATCCATGAGGATTCTCAGAACAAGACAAAGCTTGCTGAGTTGCTCCGATACCACTCCACCAAGAGTGGGGATGAGCTGACTAGCCTCAAGGACTACGTTACTAGAATGAAGGAGGGTCAGAGTGATATCTACTATATCACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCCCCATTCCTTGAGAAACTAAAGAAGAAGGGCTATGAGGTTCTTTACATGGTTGATGCTATTGATGAGTATGCTGTTGGTCAGCTGAAGGAATTTGAGGGAAAGAAGCTGGTCTCAGCAACCAAAGAGGGCTTGAAGCTTGATGAAAGTGAAGATGAAAAGAAGCAGCAGGAAGCTCTCAAAGAGAAGTTTGAGGGTCTATGCAAGGTGATGAAGGATGTGTTGGGAGAGAGGGTAGAGAAGGTGGTTGTATCCGACCGGGTGGTGGATTCTCCTTGCTGTTTGGTGACAGGAGAGTATGGGTGGACTGCTAACATGGAGAGGATCATGAAGGCCCAGGCACTTAGAGACTCCAGCATGGCTGGTTACATGTCCAGCAAAAAGACAATGGAGATCAACCCCGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGACTGATGTGGACAAGAATGACAAATCAGTGAAGGACCTTGTCCTCTTACTCTTTGAGACTTCTCTCCTCACCTCAGGATTTAGTCTTGATGAGCCCAACACCTTCGGAAATAGGATCCACAGGATGCTCAAGCTTGGCTTGAACATTGATGAGGAAGCTGGGGACGTTGACGTTGACATGCCCCCATTGGAGGAGGCTGATGCAGAGGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAA 2079 0.4642 MAEVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPDLFIHIVPDKTNNTLSIIDSGIGMTKAGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTSGERLGRGTKITLHLKEDQLEYLEERRVKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEDKKDEDKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYSAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCIELFFEIAENKDDYNKFYEAFSKNLKLGIHEDSQNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQSDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKQQEALKEKFEGLCKVMKDVLGERVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENPIMEELRKRTDVDKNDKSVKDLVLLLFETSLLTSGFSLDEPNTFGNRIHRMLKLGLNIDEEAGDVDVDMPPLEEADAEAEGSKMEEVD* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0828 692 MobiDBLite consensus disorder prediction 670 692 - -
Vvi19g0828 692 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Vvi19g0828 692 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Vvi19g0828 692 PRINTS 90kDa heat shock protein signature 158 175 IPR020575 -
Vvi19g0828 692 PRINTS 90kDa heat shock protein signature 176 194 IPR020575 -
Vvi19g0828 692 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vvi19g0828 692 MobiDBLite consensus disorder prediction 205 231 - -
Vvi19g0828 692 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4 201 IPR036890 -
Vvi19g0828 692 FunFam Heat shock protein HSP 90-alpha 1 216 - -
Vvi19g0828 692 MobiDBLite consensus disorder prediction 203 241 - -
Vvi19g0828 692 Hamap Chaperone protein HtpG [htpG]. 2 657 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi19g0828 692 Gene3D - 424 510 - -
Vvi19g0828 692 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 169 IPR003594 -
Vvi19g0828 692 SUPERFAMILY HSP90 C-terminal domain 535 656 IPR037196 -
Vvi19g0828 692 Coils Coil 515 535 - -
Vvi19g0828 692 Gene3D - 255 423 - -
Vvi19g0828 692 SUPERFAMILY Ribosomal protein S5 domain 2-like 256 511 IPR020568 -
Vvi19g0828 692 PIRSF HSP90_HTPG 1 692 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi19g0828 692 SMART HKATPase_4 27 170 IPR003594 -
Vvi19g0828 692 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 5 679 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi19g0828 692 Coils Coil 220 250 - -
Vvi19g0828 692 FunFam Heat shock protein 90 alpha 424 510 - -
Vvi19g0828 692 CDD HATPase_Hsp90-like 14 190 IPR020575 -
Vvi19g0828 692 FunFam Heat shock protein 90 alpha 255 423 - -
Vvi19g0828 692 Gene3D - 511 661 IPR037196 -
Vvi19g0828 692 Pfam Hsp90 protein 172 672 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi19g0828 692 Gene3D - 3 216 IPR036890 -
Vvi19g0828 692 FunFam Heat shock protein 90 alpha 511 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0828 Vvi-Chr19 9159413 9162652 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0828 K04079 - vvi:100261759 1235.71