Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0826 ATGTTGCAGTGCTTAGAGGGATTTAAGCATTTAATTGCTTCCCTACTGCGGTGTTGTGATCTTGATTTGTATAATCAAGCAAGAGGTCTTCAAGATCCTGAAGTTCTTGCAAGGGAAACAGTGTTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGGAAGAGTTTCAATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTTTTCTTTTCAGTTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAGGAGGTGAAGCAAATGGTAGTGGCCACACTTGCTGAATCTGGTATGAATCTTTCGGATGATGTTATAGAAAGTATCATTGACAAGACCTTTGAGGAAGCTGACACAAAACATGATGGAAAGATTGACAAAGAAGAGTGGAGAAGCCTTGTTCTACGACACCCATCCCTTTTGAAGAATATGACTCTTCAATACCTCAAGGACATCACCACCACATTCCCAAGCTTTGTCTTTCATTCTCAAGTTGACGACACCTGA 681 0.4141 MLQCLEGFKHLIASLLRCCDLDLYNQARGLQDPEVLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0826 226 Gene3D - 32 226 - -
Vvi19g0826 226 Pfam EF-hand domain pair 122 188 IPR002048 GO:0005509
Vvi19g0826 226 Pfam EF-hand domain pair 64 109 IPR002048 GO:0005509
Vvi19g0826 226 SUPERFAMILY EF-hand 33 218 IPR011992 -
Vvi19g0826 226 FunFam calcineurin B-like protein 3 32 225 - -
Vvi19g0826 226 SMART efh_1 123 151 IPR002048 GO:0005509
Vvi19g0826 226 SMART efh_1 86 114 IPR002048 GO:0005509
Vvi19g0826 226 SMART efh_1 167 195 IPR002048 GO:0005509
Vvi19g0826 226 PRINTS Recoverin family signature 137 155 - -
Vvi19g0826 226 PRINTS Recoverin family signature 183 203 - -
Vvi19g0826 226 PRINTS Recoverin family signature 90 111 - -
Vvi19g0826 226 ProSiteProfiles EF-hand calcium-binding domain profile. 163 198 IPR002048 GO:0005509
Vvi19g0826 226 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Vvi19g0826 226 PANTHER CALCINEURIN B 26 225 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vvi19g0826 226 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0826 Vvi-Chr19 9147678 9157412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0826 1 226 EF-hand Containing Proteins AT5G55990 91.150 1.25e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0826 K06268 - vvi:100266945 449.129