Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0798 ATGCATAGGAGTCCAGCGCTAGACATGCCTGATGTCCCAAAAGGGCAGCTTCCTCCACACATCGAGCTCCAGAGAACTCGCGTTCTCTGCAATTTCGATGCTCCTACTCATACAGAGAATGTTCAATATTCTGGTGCTTATTCATCCATGGGAGTTGATAATAGTTTGCGGATGGATCAATTCTGCAATAATTTTAGAGTTGAAGTGATTCGGCTTTCAGAGGATGACATGGAGTTTGATATGATTGGTATTGATCCTTCGATTGCTAATGCATTTCGTAGGATCCTCATAGCAGAGCTTCCCACAATGGCTATCGAAAAGGTTCTCATTGCAAATAATACATCAATTGTCCAAGATGAAGTGCTTGCCCACAGATTGGGTCTCATTCCAATCAATGCTGACCCAAGGCTGTTTGATGATTTGTCAGAAAATGATACTCCTAATGAAAAGAACACCATTGTTTTTAACCTTCACGTTCGTTGTGAGCGAGGCGGGCCCCGACTTACAGTAAAATCAAATGAATTAAAGTGGTTGCCACATGGTAGTGAGTTTCCATTGGCTACAGAAAATACAACTTCAAGTTCAACCTCAAAACCAAAAACCTATACCTCATTTAGCTGCAGCCAGGATTCCTTGCCAGAATTTTCTGACAAATCCATCGGTCCAAAGCATCCAGACATTATTATTGCTAAACTTGGCCCTGGCCAGGAAATTGAACTTGAAGCACATGCGGTTAAAGGGATGGGTAAAACTCATGCGAAGTGGTCGCCAGTGGCCACTGCTTGGTATAGGATGCTTCCTGAGGTTGTGTTGTTACAAGAAATTGAAGATGAGAAGGCAGAAGAACTTGTCAAGAAATGTCCAGTTAATGTATTTGATATTGAAGATATTGCCAAAGGTAAAAAAAAGGCCACTGTAGCCCGACCACGAGCTTGTACACTATGTAGAGAATGCATCAGAGGGGATGATTGGGATAAGCATGTGGCGATACGACGTGTCAAGAATCACTTCATATTTACCATTGAATCAACTGGGGCATTACCTCCAGAAGTACTATTTAATGAAGCTGTGAAGGTCTTGGAAGACAAATGCGAACGAGTGATTACTGAGCTCTCATAA 1119 0.4227 MHRSPALDMPDVPKGQLPPHIELQRTRVLCNFDAPTHTENVQYSGAYSSMGVDNSLRMDQFCNNFRVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHRLGLIPINADPRLFDDLSENDTPNEKNTIVFNLHVRCERGGPRLTVKSNELKWLPHGSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCPVNVFDIEDIAKGKKKATVARPRACTLCRECIRGDDWDKHVAIRRVKNHFIFTIESTGALPPEVLFNEAVKVLEDKCERVITELS* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0798 372 SUPERFAMILY RBP11-like subunits of RNA polymerase 63 371 IPR036603 GO:0006351|GO:0046983
Vvi19g0798 372 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 78 364 IPR011263 GO:0003899|GO:0006351
Vvi19g0798 372 Gene3D - 67 363 IPR036603 GO:0006351|GO:0046983
Vvi19g0798 372 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 90 130 IPR001514 GO:0003677|GO:0003899|GO:0006351
Vvi19g0798 372 PANTHER DNA-DIRECTED RNA POLYMERASE 26 372 - -
Vvi19g0798 372 FunFam RNA polymerase I subunit 43 102 253 - -
Vvi19g0798 372 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 66 371 IPR022842 GO:0003899|GO:0006351
Vvi19g0798 372 Pfam RNA polymerase Rpb3/RpoA insert domain 108 256 IPR011262 GO:0003899|GO:0006351|GO:0046983
Vvi19g0798 372 Gene3D - 102 253 IPR036643 -
Vvi19g0798 372 CDD RNAP_I_II_AC40 65 370 IPR033901 GO:0001054|GO:0001056
Vvi19g0798 372 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 101 257 IPR036643 -
Vvi19g0798 372 SMART rpoldneu2 76 370 IPR011263 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0798 Vvi-Chr19 8915886 8922246 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0798 K03027 - vvi:100248046 747.658