Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0796 ATGGGAATCGTGAATCAAGAAGCAGTGAAGCAATTGCAGCTGTTGTTGGATGAAGTTGAGGAGACGCTGAAGAACTCATTTGAGAATGTGCATCAAGGGTATGTACGGGAAACTTTGGCAAGGTTTCTGAAAGCAAGGGATGGGAATGTCCCAAAAGCTCATAAAATGTTGGTAGACTGCTTAAATTGGAGGATTCAGAATGAAATCGACAATATATTGACGAAACCAATCCTCCCTCCTAATTTATACAGAGCAGTGCGAGACTCACAGCTGACAGGTCTATCCGGCTATACAAAAGAGGGTCTTCCTGTCATTGCTGTTGGTGTTGGGCAGAGCACATTTGACAAGGCATCTGTTCACTATTATGTGCAGTCACACATCCAAATGAATGAGTATAGAGATCGTGTTGTATTGCCTGCTGCAACAAAGAAGCATGGGCGATACATTGGCACCTGTGTGAAGGTTTTGGACATGACTGGTTTAAAGCTTTCAGCGCTGAATCAAATAAAGCTGTTGACTGTGATATCGACAATCGATGATCTGAATTATCCCGAGAAGACAGATACATACTACATTGTTAATGTCCCTTACATATTTTCAGCATGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGGACAAGGAGGAAAGTTCAAGTGTTACAAGGATGTGGGAGAGATGAGTTGCTGAAGATAATGGATTATGCATCCCTCCCACATTTTTGTAGAAGAGAAGGGTCAGGATCATCCCATCATTCCGAAAATGGAACAACCGATAATTGTTTCTGCTTGGATCATGTGTTCCATCAACACGTTTACAATTACGTAAACCAGCAGGCAGCCCTTGTGGAGTCAGTAGGGCCATGGAAACAAGGGTCATTCCATGTGGCCTTCCCTGAGCCAGACCCAGAAGGTAAAAAGATTGCCAAGACCATAGAATCAGAGTTCCACAAGATTGGAGATCATAAGAACGGCCTTTCCAACTCTATGTCTAACCTTAAAGTCAATGACGATTGA 1017 0.4277 MGIVNQEAVKQLQLLLDEVEETLKNSFENVHQGYVRETLARFLKARDGNVPKAHKMLVDCLNWRIQNEIDNILTKPILPPNLYRAVRDSQLTGLSGYTKEGLPVIAVGVGQSTFDKASVHYYVQSHIQMNEYRDRVVLPAATKKHGRYIGTCVKVLDMTGLKLSALNQIKLLTVISTIDDLNYPEKTDTYYIVNVPYIFSACWKVVKPLLQERTRRKVQVLQGCGRDELLKIMDYASLPHFCRREGSGSSHHSENGTTDNCFCLDHVFHQHVYNYVNQQAALVESVGPWKQGSFHVAFPEPDPEGKKIAKTIESEFHKIGDHKNGLSNSMSNLKVNDD* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0796 338 Coils Coil 5 29 - -
Vvi19g0796 338 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 330 - -
Vvi19g0796 338 Gene3D - 4 283 IPR036865 -
Vvi19g0796 338 SUPERFAMILY CRAL/TRIO N-terminal domain 14 76 IPR036273 -
Vvi19g0796 338 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Vvi19g0796 338 CDD SEC14 91 241 IPR001251 -
Vvi19g0796 338 SMART sec14_4 79 247 IPR001251 -
Vvi19g0796 338 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 239 IPR001251 -
Vvi19g0796 338 Pfam CRAL/TRIO domain 90 241 IPR001251 -
Vvi19g0796 338 SUPERFAMILY CRAL/TRIO domain 82 242 IPR036865 -
Vvi19g0796 338 Pfam CRAL/TRIO, N-terminal domain 17 59 IPR011074 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0796 29 321 Acyl Lipid Metabolism Gene Families AT1G55840 74.061 2.53e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0796 - - vvi:100253176 681.789