Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0793 ATGGGTGGTGGAGAGGATGAGGCAGTGCAGCCACTGTTTGCGACCAAACAATTGAAGGGTAGAGTTGCTTATAGGTGTTTTGCTTCCACAATCTTTGTGGGAATATGTTTGATTTTGGTGTATAGACTGAAGCATATACCAAGTGCAGAAGAACATGGCAGATGGGCTTGGATTGGATTGTTCATGGCTGAGCTTTGGTTCGGGTTTTATTGGATCATCACACAGTCTGTTCGTTGGAATGTTATCCATCGTGTACCGTTCAAGGATAGGCTCTTGCAGAGGTATGGGGAGAAGTTACCAGGGGTGGACATCTTTGTGTGCACGGCGGATCCAACCTTAGAGCCACCAACTTTGGTGGTTAACACCGTCTTGTCAGCCATGGCTTATAACTATCCAACTGACAAGTTGAGCGTCTATCTTTCTGATGATGGCGGTTCAGAGCTGACGTTCTATGCTCTCTTGGAGGCCTCTCATTTCTCTAAACACTGGATTCCCTTCTGCAAGAAATTCAAGGTCGAGCCGCGGTCTCCACAGGGCTATTTTGTCCAGCATAATGATTCACAGGACATCACTTATGCCCATGAATGGCTGGCCATTAAGAAATTGTATGAAGAGGTGAAAAACCGGATTGAATCAGCTGTTGAGGTGGGCAGCATTCCAAAGGAAGTAAGGGATCAACACAAAGGATTCTCAGAATGGGACTCTAAAATAACTAAGAAGGATCATCAGTCAATTGTTCAGATTTTAATCGACGGGAGGGACACAAATGCAATGGATAGTGATGGAAATCGGTTGCCAACACTGGTATACATAGCACGAGAGAAGAGACCGCAAGTGCATCATAACTTCAAAGCTGGTTCCATGAATGCATTGACAAGAGTGTCATCAGAGATGAGCAATGGACCTATAATCCTAAACCTGGATTGTGACATGTACTCGAACGATCCTGATGCGATAATGGATGCACTATGTTTCTTCCTGGATGAAGAGAAAGGCCACAGGGTTTCTTATGTGCAGTATCCACAGCACTACAATAATGTCCACAAGAGCAATATTTATTCATGTTCAAATATGGTTGTTAATAAGATTGAGCTTGCTGGCCTAGATGGATATGGTGGGGCTCTGTATTGTGGCACGGGGTGCTTCCATAGAAGAGAAAGTCTTTGTGGAAGGAGGTATTCTGAGGATTTCAAAGCAGAATGGAGCACTAGGACTTGGAAAAATGCTGAAAGAACTGTCCAGGAGTTGGAAGAAGCATCCAAAGTCCTTGCCAATTGTAGCTATGAGAAGGGTACTCTATGGGGGCAAGAGATGGGTTTGATGTATGGGTGTTCAGTGGAAGATGTCATCACTGGGTTGGTAATTCAATGCAAGGGTTGGGAACCAGTTTACTATAGTCCCTGTAAAAGGGCCTTCTTGGGTGTTGCCGCAACTACATTAGATGACGCTCTTATTCAATACAAGAGGTGGGCTGAAGGGATGTTTCAGATATTTTTCTCTAAGTACTGCCCCTTCTTCTATGGGCACAGGAAGATAAAACTGGGAGCCCAGATGGGTTACTGTGTTTACCTTCTGTGGGTTCCTAACTCCTTGCCAATGCTCTATTACACTATTGTTCCTCCCCTGTTCTTGCTTCGTGGCGTTGCCTTATTCCCAGAGGTGTCAAGCCTATGGTTCCTGCCATTTGCGTATGTTTTTACAGCCAAGTACGCTTACAGCATGCTTGAGGCAGTGTGGTGTGGAGATTCATTCAAGGCATGGTGGAACCTAGAACGAACATGGCTGATCCGATCAGCAACTTCATACCTTTTTGCCTTGATTGATAACCTCACCAAGCAACTGGGGCTGTCTGAAACAACCTTTGTCATCACAGCCAAGGTGGCTGACGAGGGTGTTTTGAAGAGATACCAGCAAGAGATTATCGAGTTTGGAAATGTATCTCTAATGGTTACCATCATATCAACGTTGGCACTGCTGAATCTTTTCAGTTTAGTTGGGGGGATGACGAGAGTCATCTTCAGTATGGAGTTCAGGGGTGGTGTTGCAGGCTTGATCCCACATATTATCCTATGTGGGCTGACTGTTATGCTCAATCTTCCAGTGTACCATGCCCTCTTTATCCGCAGTGACAAGGGCAGAATCCCATCCTCTGTTATGTTCAAGTCAATTGTTTTATCCTCACTGGCATGTCTACTGCCCTATTTATTATAG 2211 0.4496 MGGGEDEAVQPLFATKQLKGRVAYRCFASTIFVGICLILVYRLKHIPSAEEHGRWAWIGLFMAELWFGFYWIITQSVRWNVIHRVPFKDRLLQRYGEKLPGVDIFVCTADPTLEPPTLVVNTVLSAMAYNYPTDKLSVYLSDDGGSELTFYALLEASHFSKHWIPFCKKFKVEPRSPQGYFVQHNDSQDITYAHEWLAIKKLYEEVKNRIESAVEVGSIPKEVRDQHKGFSEWDSKITKKDHQSIVQILIDGRDTNAMDSDGNRLPTLVYIAREKRPQVHHNFKAGSMNALTRVSSEMSNGPIILNLDCDMYSNDPDAIMDALCFFLDEEKGHRVSYVQYPQHYNNVHKSNIYSCSNMVVNKIELAGLDGYGGALYCGTGCFHRRESLCGRRYSEDFKAEWSTRTWKNAERTVQELEEASKVLANCSYEKGTLWGQEMGLMYGCSVEDVITGLVIQCKGWEPVYYSPCKRAFLGVAATTLDDALIQYKRWAEGMFQIFFSKYCPFFYGHRKIKLGAQMGYCVYLLWVPNSLPMLYYTIVPPLFLLRGVALFPEVSSLWFLPFAYVFTAKYAYSMLEAVWCGDSFKAWWNLERTWLIRSATSYLFALIDNLTKQLGLSETTFVITAKVADEGVLKRYQQEIIEFGNVSLMVTIISTLALLNLFSLVGGMTRVIFSMEFRGGVAGLIPHIILCGLTVMLNLPVYHALFIRSDKGRIPSSVMFKSIVLSSLACLLPYLL* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0793 736 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 234 407 IPR029044 -
Vvi19g0793 736 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 92 189 IPR029044 -
Vvi19g0793 736 FunFam Cellulose synthase-like protein E1 234 404 - -
Vvi19g0793 736 Pfam Cellulose synthase 412 732 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi19g0793 736 Pfam Cellulose synthase 102 394 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi19g0793 736 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 10 724 - -
Vvi19g0793 736 FunFam Cellulose synthase isolog 92 189 - -
Vvi19g0793 736 SUPERFAMILY Nucleotide-diphospho-sugar transferases 114 502 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0793 Vvi-Chr19 8806218 8809746 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0793 10 730 Glycosyltransferase AT1G55850 50.829 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0793 - - vvi:100260085 1487.24