Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0790 ATGAAAATTTGGGCGCCTGAGTTCGGGTTCATTGTGATTTTGGTGCTTTTGTCTGTACAAGCGGTATGTGGGATTAGGTTTGTGATTGATAGAGAAGAATGCTTCTCCCATAATGTTGAATATGAAGGGGATACAATTCACGCATCATTTGTGGTGATTAAGGTTGATGCTTCATGGCATTATAATAAAGATGGTGTTGATCTTGTTGTGAAGGGACCTTCTGGTAATCAAATTCAAGATTACCGTGACAAGACAAGTGAGAAGTTTGAGTTCATGGCTCATGAAAAAGGACTTCATCGGTTCTGCTTTACTAACAAGTCTCCTTATCATGAAACCATAGACTTCGACGTATATACTGGTCATTTTGCATACTATGATCAGCATGCAAAAGATGAGCATTTTAATCCTTTATTAGAACAGATATCAAAATTAGAGGAAGCACTTTACAACATTCAGTTTGAACAGCATTGGCTTGAGGCTCAGACTGAACGCCAGGCTAGAGTAAATGATGCAATGAACCGGAGAGCAGTTTACAAAGCCTTCTATGAATCAGCAGCACTTATTGGGGCTAGTATCCTTCAAGTCTACCTTCTACGACGTCTGTTTGAACGGAAGCTTGGAACATCTAGAGTTTAG 636 0.3962 MKIWAPEFGFIVILVLLSVQAVCGIRFVIDREECFSHNVEYEGDTIHASFVVIKVDASWHYNKDGVDLVVKGPSGNQIQDYRDKTSEKFEFMAHEKGLHRFCFTNKSPYHETIDFDVYTGHFAYYDQHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQARVNDAMNRRAVYKAFYESAALIGASILQVYLLRRLFERKLGTSRV* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0790 211 ProSiteProfiles GOLD domain profile. 32 119 IPR009038 -
Vvi19g0790 211 SMART EMP24_GP25L_2 24 203 IPR009038 -
Vvi19g0790 211 Pfam emp24/gp25L/p24 family/GOLD 31 203 IPR009038 -
Vvi19g0790 211 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 11 206 IPR015720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0790 Vvi-Chr19 8779722 8785470 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0790 - - vvi:104877624 434.876