Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0789 ATGTCGGACAACGGTAGACCACTGCCAAAATTTGGTGAATGGGATGTTAATGACCCTGCTTCTGCTGAAGGTTTTACTGTGATCTTTAATAAGGCTAGGGATGAGAAAAGAACTGGTGGCCAACCTGAGTCACCAGCAAATGTGGAAAATAATGTTAAGCAGGGAGTGGAGCCTAGCAAGCCTCAAACTAAAAAATGGTTTTGTTGCTTGCAAGCCCCCCGTGCAGAATCTTGA 234 0.4487 MSDNGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKRTGGQPESPANVENNVKQGVEPSKPQTKKWFCCLQAPRAES* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0789 77 MobiDBLite consensus disorder prediction 43 58 - -
Vvi19g0789 77 MobiDBLite consensus disorder prediction 33 62 - -
Vvi19g0789 77 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Vvi19g0789 77 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 68 IPR040387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0789 Vvi-Chr19 8775291 8778344 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0789 - - vri:117909661 160.614