Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0786 ATGGCGCAAGTGCTCTCCTTTGGATTGAGGATTCGGTGTTCGGACGCCCGCAGAACTTCTTCTAAGCCTTTGAAGGTTGCGAAGACGAGGCCCAACACGGCAATTCCAACTCGGTCAACAGGTACTCGTCGGAATGCCAACAGAACATACGGTGTCAATTTGGAGATTTCCCCTCATAGAGCTGTCTCTGCAGTGAGATTGATGAGAATAGAGCTGGGCGGCGCTTTTGCTGACCTCTTGAACGAGAGAGGAAAGGGTTCTGGTGATAATGAGATGGGTTATGTTGAAAGAACTCTTGGTTTTCGAACCCGAGATTTGGATGATCGGGACCTTAGATTGGTTACGGATATTGTTGGAGGTTCTATTCGTTGGCGAAGGTACCTTGACCATCTGATTGTTTCGCTATGCCATGATTCAAAAACATTTAGAAGCATGGAACCTCTTCTCTTACAGATTCTCCGAATTGGTTTCTACGAGATTGTCAATCTAGATATGCCACCATATGCTGTTGTAGATGAGAATGTGAGGCTTGCAAAGGTTGCCCTTAGACCAGGTGCTGGTAACATGGTCAATGCAATTCTCCGGAAACTAGTTTTGCTTAAGGAAAAAAACTCCCTTCCTTTACCTAAACTTGAAGGCGATGATCGTGCACAAGCACGTGCTCTTGCAACCCTTTATTCCCATCCAGTTTGGATGGTACGAAGATGGACAAAGTATCTTGGGCAAGAAGAAGCTATTAAATTGATGATGTGGAACAACAGTGAGCCCAGTTTTAGTCTGAGAGCAAACAGCGGAAAGGGGTTTACAAGAGCTGATCTTGTGATGCGGCTTAAAATGTTGAAGGTTCCACATGAGCTTTCTCCACATTTGGATAATTTTGTCCGCATCAGAACTGGGATGCAGATTGTCATACAAGCTCAATTACTGAAAGAAGGTTTATGCTCAGTCCAGGATGAAAGTGCAGGTCTGGTAGTTTCTGTCGTGGATCCACAACCTGGTGAGAGCATTATTGATTGCTGTGCTGCTCCTGGAGGAAAGACCATTTTTATGGCATCCTGTTTAAGTGGCCAAGGTATGGTGCATGCAATTGACATTAACAAAGGTCGGTTGAGAATCGTTAAAGAGACAGCCAAGTTGCTCCTAGTTGATGATGTTATCACTACCGTTCATGCTGATCTTTGTACCTTTGCCAAAAATAATCCGGTGAAGTCTGATAAGGTTTTGCTGGATGCTCCATGTTCTGGACTGGGTGTTCTCTCAAAGAGAGCGGACTTGCGTTGGAATAGGAGTTTAGAGGATATGGAACAACTCAAGAATTTACAGGATGAGCTGTTAGATGCTGCTGCCATATTGGTTAAGCCTGGTGGAGTATTAGTATACAGCACATGTTCCATTGATCCCGAAGAGAATGAAGAGAGAGTGGCTGCATTTCTTCAGAGGCACCCGGAATTCAGCATCGATCCTGTTGGCAGATATGTTCCATCCGATTTTGTAACAGAGGGTGGTTTTTATTTCTCCAACCCAGTCAAGCATGCACTAGATGGTGCTTTTGCTGCCCGTTTGGTTCGATCCTCATAA 1578 0.448 MAQVLSFGLRIRCSDARRTSSKPLKVAKTRPNTAIPTRSTGTRRNANRTYGVNLEISPHRAVSAVRLMRIELGGAFADLLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIVGGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLAKVALRPGAGNMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIRTGMQIVIQAQLLKEGLCSVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQGMVHAIDINKGRLRIVKETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLGVLSKRADLRWNRSLEDMEQLKNLQDELLDAAAILVKPGGVLVYSTCSIDPEENEERVAAFLQRHPEFSIDPVGRYVPSDFVTEGGFYFSNPVKHALDGAFAARLVRSS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0786 525 Gene3D Sun protein; domain 3 220 321 - -
Vvi19g0786 525 PRINTS Viridiplantae FMU-related RCMT signature 205 218 IPR023268 -
Vvi19g0786 525 PRINTS Viridiplantae FMU-related RCMT signature 65 88 IPR023268 -
Vvi19g0786 525 PRINTS Viridiplantae FMU-related RCMT signature 89 105 IPR023268 -
Vvi19g0786 525 PRINTS Viridiplantae FMU-related RCMT signature 482 494 IPR023268 -
Vvi19g0786 525 CDD AdoMet_MTases 336 461 - -
Vvi19g0786 525 SUPERFAMILY NusB-like 95 232 IPR035926 -
Vvi19g0786 525 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 215 319 - -
Vvi19g0786 525 Gene3D Vaccinia Virus protein VP39 322 525 IPR029063 -
Vvi19g0786 525 FunFam Ribosomal RNA small subunit methyltransferase B 320 524 - -
Vvi19g0786 525 FunFam Ribosomal RNA small subunit methyltransferase B 57 207 - -
Vvi19g0786 525 Pfam 16S rRNA methyltransferase RsmB/F 327 521 IPR001678 GO:0008168
Vvi19g0786 525 NCBIfam 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 102 523 IPR004573 GO:0006364|GO:0008649
Vvi19g0786 525 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 248 524 IPR001678 GO:0008168
Vvi19g0786 525 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 182 524 IPR023267 GO:0001510
Vvi19g0786 525 Gene3D - 76 219 IPR035926 -
Vvi19g0786 525 Pfam NusB family 95 198 IPR006027 GO:0003723|GO:0006355
Vvi19g0786 525 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 220 523 IPR029063 -
Vvi19g0786 525 PRINTS RNA (C5-cytosine) methyltransferase signature 308 322 IPR023267 GO:0001510
Vvi19g0786 525 PRINTS RNA (C5-cytosine) methyltransferase signature 337 347 IPR023267 GO:0001510
Vvi19g0786 525 PRINTS RNA (C5-cytosine) methyltransferase signature 405 417 IPR023267 GO:0001510
Vvi19g0786 525 PRINTS RNA (C5-cytosine) methyltransferase signature 506 523 IPR023267 GO:0001510
Vvi19g0786 525 PRINTS RNA (C5-cytosine) methyltransferase signature 455 471 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0786 Vvi-Chr19 8721937 8728041 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0786 K03500 - vvi:100253242 1014.6