Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0785 ATGAAGCAATGGCCTCTGCTTCGTTCTCTCTCCGAAAGCCTAACCCGAACCCTAGCTGCCCATTCTGCTTACACTCTTCGCTTCCTCTCCTCCGCCACAGCCTCACCAACCTTTGCTCTCAAGAACGTTACCAAGTCCAACTTCGAGTCCTCCCTCGCCGACCTCCGGCGCCATGTTCGCGACGCCGATTTCGTGGCCATTGACCTCGAGATGACCGGCGTCACCAGCGCTCCTTGGAGAGAATCCTTCGAGTTTGATCGGTTTGATGTTCAGTATCTCAAGGTTAAGGACTCGGCGGAGAAGTTCGCTGTTGTCCAGTTCGGTGTTTGTCCCTTCCGGTGGGACAGTTCTAGGCATTGCTTCGTGGCTCATCCGCACAATTTTTATGTTTTTCCTCGGCAAGAGCTTCCAGTTGATGGCCCTTCATATGAGTTCCTCTGCCAGACAACGTCAATTGACTTCCTAGCTAAATACCAGTTTGATTTCAATGCCTGTATATATGAAGGAGTATCTTATTTATCCAGAGAACAAGAGAATGAAATGCTGAGATGCCTAAATTCCGAATGTGATGATGAGATGTCACTATTGTGGCGTAACATGAAAGAAGTTAGAGACACGCCACTGGTTAGTGTGGCAGATGTTCTCTTCAGCGAAAGAATGAAGAACAGGTTCAATGAATGGCGCAAGGAGTTATTACAGGATAGAAAGGGAGGGTCTCAATTTCTGGAGACCTCAAATGACATGAAGCAACAATTTCAAACTATTTTCTTTAAGATGCGACCAGCTCTTATATTGAATGGGTTCACTGCTCATCAGCTGAGATTGATTCAATTGGTCATAAAGAAGCATTTTAAAGATCTTGTTTACATCCGTTCAAGTGGCGATGGTTCCTACTCAGAACTAATAGTATATATAGACTCTGACAATGACAAGAACCTACTTATGAAAGAGGTGAAGGATGGGCTTCGCAGAGAAGCAGAGATGAAAATTAAAACTGCGGTTGGGTTCCGGCATGTCATTGACCTTCTTTCCTCTGAACAGAAGTTGATTGTTGGCCACAATTGCCTTTTAGATATTGCACACATATACAACAAATTCTTTGGACCTCTTCCATTGACTGCTGAAGATTTTGTCTCCTCTATTCACAAGTACTTCCCATACATGATTGATACAAAAATACTCTTGAATACAAATAATGTACTTAAGCATCTGATGAAGAATGGCAGCACATCACTATCGAAGGCATTTGCCTCATTGTGTCCGCAAATTGCTTCCAGTTCCAAAAACTCGGGTTTGGCTTTCCAGCCATGGGTTGAAGTTGAGGTGCAAGTGGATGATATGAGGTCCTCCAACTGGAACTCCGGAGCCAAGCATGAAGCTGGCTATGATGCTTTTATGACTGGGTGTGTCTTTGCTCAGGCATGCAGTAATTTAGGAATTGATTTCAAGAAACATTCTTCCTCAGCAAACTTGGCCCACAATAAAAATCTCCAGAAGCATGTCAATCACCTCTACTTCAGCTGGGTTAATGGAGACATTATTGATCTCGGTACTGGAAACAGAATTGCGGCAACTACAGTTTGTTATAACCTGAAAAGGCGGTACCCAAAGATTTTGTTCTCTAATATTGTCATAGTATGGGGATTTCCTTCCCAACTCTCATCAAAGAAGATAAGAGAGTGTATCTCTAAAGCTTTTGGTCCAATTTCTGTTACTACCATCTATCACTTGGATGAAACTGCAGTTTTTGTTCAATTCAGCAAGCCAGAGTTGGTGGCTGACTTTCTGGTTTTAAAAGAAACCTTAGAGACAATTCAAGATCCAATCTCAGTTTTGCATCCCCTCTCAGTACTGTTGGAAGGTGGAAACACTTGTGCTGCCAGCTATGAAACTTATAAAGAGATTTGTAGCTCACCCATCTCCAAAGTCATGTTTGCAGATCAGGCCAAGGCTGTTGGCATTAAATGGAAAACCAAATTAATTGAATCAAAAGAAAAGGTGAAGACTCAAGAAGACGAAAGTTTCAGCAAAGAAAATGGAGCCACTGATGCTGCTTCTGATCCTGCTGATAAAAGCAAGACCAGGAAGATCGAAGATGTGATAGATAATCTTTCAGATGACCGTATCTCAGGTAGTGAAATCATAGATTCTTTGTATGCTGCCCAAACCAAGCTTAGCAAGCATATTAGAACTACAAATTTATGA 2205 0.4263 MKQWPLLRSLSESLTRTLAAHSAYTLRFLSSATASPTFALKNVTKSNFESSLADLRRHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKDSAEKFAVVQFGVCPFRWDSSRHCFVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFLAKYQFDFNACIYEGVSYLSREQENEMLRCLNSECDDEMSLLWRNMKEVRDTPLVSVADVLFSERMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAHQLRLIQLVIKKHFKDLVYIRSSGDGSYSELIVYIDSDNDKNLLMKEVKDGLRREAEMKIKTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMIDTKILLNTNNVLKHLMKNGSTSLSKAFASLCPQIASSSKNSGLAFQPWVEVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVNGDIIDLGTGNRIAATTVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIRECISKAFGPISVTTIYHLDETAVFVQFSKPELVADFLVLKETLETIQDPISVLHPLSVLLEGGNTCAASYETYKEICSSPISKVMFADQAKAVGIKWKTKLIESKEKVKTQEDESFSKENGATDAASDPADKSKTRKIEDVIDNLSDDRISGSEIIDSLYAAQTKLSKHIRTTNL* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0785 734 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 42 642 - -
Vvi19g0785 734 Gene3D - 237 520 IPR036397 GO:0003676
Vvi19g0785 734 Gene3D - 42 230 IPR036397 GO:0003676
Vvi19g0785 734 SUPERFAMILY Ribonuclease H-like 41 486 IPR012337 -
Vvi19g0785 734 MobiDBLite consensus disorder prediction 668 697 - -
Vvi19g0785 734 Pfam CAF1 family ribonuclease 43 471 IPR006941 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0785 K01148 - vvi:100258377 1466.83