Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0778 ATGTTTGTCATGCAGAGTAAGCACCTAGTGGTGTTCACAGGTGCTGGAATATCAACTTCTTGTGGTATACCTGATTTTCGAGGTCCAAAGGGTATTTGGACACTTCAGCGTGAAGGCAAAGCCTTGCCACAAGCATCACTGCCATTTCATCGTGCAATGCCAAGCATGACTCATATGGCTTTGGTTGAACTAGAGAAAGCTGGTATCCTAAAGTTTGTCATTAGTCAGAATATTGATGGCCTCCATCTTCGTTCTGGAATACCAAGGGATAAGCTTGCTGAATTGCATGGGAACTCCTTCATGGAAATTTGTTCTTCCTGTGGAATTGAGTACTTGCGGGATTTTGAGGTGGAAACTATTGGATTGAAGGAGACATCACGACGTTGTTCCAATGTAGACTGTGGAGCGAAACTCAGGGATACAGTTCTTGACTGGGAGGATGCGTTGCCTCCAAAGGAGATGAATCCAGCAGAGAAGCACTGCAGAATGGCTGATGTTGTATTATGCCTTGGGACAAGTTTGCAGATCACTCCTGCATGCAACCTCCCTCTAAAATCCCTCCGTGGTGGGGGGAAGATTGTAATTGTGAATCTTCAGGAAACTCCAAAGGACAAGAAAGCAAGTTTGGTGATTCATGGGTTTGTAGATAAGGTAATTGCAGGTGTCATGGACCGACTTAATATGCGGATTCCTCCATTTGTTCGAATTGATCTTTTCCAAGTCATTCTAACTCATACCCTGAGTTCAGATAAAAGATTTGTGAATTGGATCCTCAGAGTAGCAAGTGTACATGGACAGAAAGCTCCATTACCATTTATCAAATATGTTGAGGTTTCCTTTTTAGATGGGCAAAATTATAAAGAAGCTGTCCTGCATAAGCAACCATTTCAGCTAAAGAGGAGAACAGTGAAAACCAAAATATTTGAAGTGCTTTTGAAACTCAACTTCAGTGATGGTTGTGGGTGTCTGTCCTCTCAAATTAAAGTCCCAATTGATTTCAAGGTTTCGACAGACTGTTTTAACTATGATAAAGATGCCATCCTCCAAAAGCTGAGAGATACAGCAACCGGGGATCCATGCTGTGGACGGCATGAAGTCATAGAGAAAAAGCCCATCCCAGATCCTAGAAGTGAAGCGACCGTTTATGCGATTGTAACCAATGTCTTGCAGTACAACAAGACTGCACCTGAAAGCAATGGTAGTGTGATGAAAGGTCGACTTGGGGGTTTGAATGGTATTGAAACATCTTGGAAGCGATCAAGAAGTGGTAAGAGGAAGCCTAGATCATAG 1290 0.4287 MFVMQSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKALPQASLPFHRAMPSMTHMALVELEKAGILKFVISQNIDGLHLRSGIPRDKLAELHGNSFMEICSSCGIEYLRDFEVETIGLKETSRRCSNVDCGAKLRDTVLDWEDALPPKEMNPAEKHCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQETPKDKKASLVIHGFVDKVIAGVMDRLNMRIPPFVRIDLFQVILTHTLSSDKRFVNWILRVASVHGQKAPLPFIKYVEVSFLDGQNYKEAVLHKQPFQLKRRTVKTKIFEVLLKLNFSDGCGCLSSQIKVPIDFKVSTDCFNYDKDAILQKLRDTATGDPCCGRHEVIEKKPIPDPRSEATVYAIVTNVLQYNKTAPESNGSVMKGRLGGLNGIETSWKRSRSGKRKPRS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0778 429 Gene3D - 3 224 - -
Vvi19g0778 429 ProSiteProfiles Sirtuin catalytic domain profile. 1 229 IPR026590 -
Vvi19g0778 429 CDD SIRT7 7 213 - -
Vvi19g0778 429 PANTHER NAD-DEPENDENT HISTONE DEACETYLASE HST4 5 227 - -
Vvi19g0778 429 Pfam Sir2 family 48 178 IPR003000 GO:0070403
Vvi19g0778 429 Pfam Sir2 family 14 37 IPR003000 GO:0070403
Vvi19g0778 429 FunFam NAD-dependent protein deacetylase SRT1 97 146 - -
Vvi19g0778 429 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vvi19g0778 429 SUPERFAMILY DHS-like NAD/FAD-binding domain 4 254 IPR029035 -
Vvi19g0778 429 FunFam NAD-dependent protein deacetylase sirtuin-6 isoform X2 1 96 - -
Vvi19g0778 429 Gene3D - 97 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0778 Vvi-Chr19 8643904 8659887 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0778 K11416 - vvi:100261752 832.017