Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0774 ATGCAGCTCCTCCCGGGCTCTGCAAGGACCCTCATGCTCAGTCTCTCGGCCTTGCTCCTCCTGTTATGCTGCGCCACCGAGGCGCACAATATCACCAGCATTCTAGCTAAGAACCCTGAGTTCTCCACCTTCAACCACTACCTCACAGTCACACACCTCGCCAACGAGATCAACCTCCGGGAGACCATCACTGTGTGTGCTGTCGACAATCCCGGAATGTCGGATCTGCTTGCTAAAGGCCTCTCCATCTACGCCATCAAGAACGTCCTTTCTCTGCACATTCTTCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCTCTCGCCGCCACCATGTACCAGGCTACCGGCTCCGCCCCCGGATCCTCCGGCTTCGTCAACATCACTGATCTCAAAGGGGGCAAGGTAGGGTTCGGTGCCGGGGGCAACGATGGCGACCTCACCGCTACGTTCGTTAAATCCGTGGAGGAGATTCCATACAACATCTCTGTCATCCAGATCAGCAAGATCCTGCCGTCGGAAGAGGCTGAAGCTCCGACGCCGGGACCTAGCGAGCAAAACCTAACGGCTCTTATGTCCGCGCACGGCTGCAAGGTGTTCGCGGACACATTGGTGGCGTCGGACGCCCAGAAGACATATGAGGACAACCTAGAGGGAGGTTTAACTGTGTTTTGCCCTATGGACGACGTGTTCAAGAGCTTTCTGCCCAAGTACAAGAATCTAACGGCGGACGGGAAGCTATCGCTGCTGTTGTACCACGGCATTCCGGTGTACCAGTCGCTGTCGCTGTTGAAATCCAGCAACGGAGTGATGAACACCCTGGCCACCGACGGAGCCAAAAAGTACGATTTCACCGTGCAGAACGACGGCGAAGTGGTGACGCTAAAGACGAAGATTGTGACGGCGAGGATCACCGGAACATTACTGGACGAACAGCCGCTGGGAATTTTCACAATCGACAAGGTTTTGTTGCCCAAAGAATTGTTCAAGGCCGAAGCACCGGCTCCTGCTCCCGCACCGGCGCCTGAAGCCGATGCTCCCACTACAAAGAAGAGCTCTCCACCGGCGCCAGTCTCCCCTGCGGAAGCTCCCAACGAAGATCCAGCGGACCAAACGGCTGATGATAACGGTTCCGTCAGATATAACGGCGGGAGATTCGTTGCTCTACTGCTGAGCTCATCGCTGGGCTTGCTAGTGCTAGTGAAAATTGGCATCTCCTCCTATTTCAATTTCTATTAA 1254 0.5558 MQLLPGSARTLMLSLSALLLLLCCATEAHNITSILAKNPEFSTFNHYLTVTHLANEINLRETITVCAVDNPGMSDLLAKGLSIYAIKNVLSLHILLDYFGAKKLHQITNGTALAATMYQATGSAPGSSGFVNITDLKGGKVGFGAGGNDGDLTATFVKSVEEIPYNISVIQISKILPSEEAEAPTPGPSEQNLTALMSAHGCKVFADTLVASDAQKTYEDNLEGGLTVFCPMDDVFKSFLPKYKNLTADGKLSLLLYHGIPVYQSLSLLKSSNGVMNTLATDGAKKYDFTVQNDGEVVTLKTKIVTARITGTLLDEQPLGIFTIDKVLLPKELFKAEAPAPAPAPAPEADAPTTKKSSPPAPVSPAEAPNEDPADQTADDNGSVRYNGGRFVALLLSSSLGLLVLVKIGISSYFNFY* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0774 417 ProSiteProfiles FAS1/BIgH3 domain profile. 189 328 IPR000782 -
Vvi19g0774 417 FunFam Fasciclin-like arabinogalactan protein 10 182 331 - -
Vvi19g0774 417 ProSiteProfiles FAS1/BIgH3 domain profile. 28 176 IPR000782 -
Vvi19g0774 417 FunFam Fasciclin-like arabinogalactan protein 2 27 169 - -
Vvi19g0774 417 Gene3D FAS1 domain 190 331 IPR036378 -
Vvi19g0774 417 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10 393 IPR033254 -
Vvi19g0774 417 Pfam Fasciclin domain 202 330 IPR000782 -
Vvi19g0774 417 Gene3D FAS1 domain 27 176 IPR036378 -
Vvi19g0774 417 MobiDBLite consensus disorder prediction 339 382 - -
Vvi19g0774 417 SUPERFAMILY FAS1 domain 186 331 IPR036378 -
Vvi19g0774 417 SMART fasc_3 227 331 IPR000782 -
Vvi19g0774 417 SUPERFAMILY FAS1 domain 34 176 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0774 Vvi-Chr19 8597520 8599178 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0774 - - vvi:100266865 705.286