Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0771 ATGGCTGAAAATGGAGGAGTCGCTTGCAAGTGTACGGAGCGAGGAATCTATGGTTTCAGAGGAGCGCGTTTCGATAAGAGATCACGAATCCGAAAAAATCTCCGAAACGTTTCGATGATTCCCCTCTTCAAACACAATGGCCTCTTCATTTGGCGATCCATCGCCGCCAACAACTGCATTTTCAGCATGGATGCCCGAGAGAAATCAAGATCCACAACATTGGAAACACCAGGACATAAGAGGGTACCCATCTTTGTGATGATGCCTGTTGACTCATTTGGCATCGACACTTCTGGGGCCCCCAGGATTAGAAGAATCAAGGCCTTAACTATATCTCTAAAAGCACTCAAGTTGGCAGGTGTCCATGGCATTGCAGTTGAGGTTTGGTGGGGCATTGTAGAGCGTTTCTCTCCTTTTGTATATAATTGGTCTCTCTATGAAGAGCTTTTCAAATTGATATCTGAGTCAGGGTTGAAGTTGCATGTTGCCTTATCTTTCCACTCAAACATGCACTCCTCGTCCAGAGTGAAAGGGGGTGTCAGTCTTCCTCTATGGATTGTAGAGATTGGAGATCTCAATAAGGATATTTATTATCGAGACCAAAATGGTTTTTCCAATGATGATTATCTTACACTAGGGGTGGATGAACTTCCTTTGTTTTGTGGCCGGACTGCTCTCCAATGTTATGAAGACTTCATGTTCAGTTTTATTAATAAATTTGAATCATTTATTGGAAGTGTGATTGAAGAAATAAGTGTTGGCCTTGGTCCTTCTGGGGAACTTAGGTATCCAGCACATCCTTTTGGTGATGGTAGATGGAGATTTCCTGGGATTGGTGAATTCCAGTGTTATGACAAGTACATGATGAGGGACCTGAAGATTGCTGCATGCCAGGAAGGAAAGCCTCAGTGGGGAGATAAGGGGCCGCAGAATGCTGGTTATTACAACAGTCTTCCATCTGGGGTCCCTTTCTTTGAAGAAGGACAGGAAAGCTTTCTCTCTGACTATGGTCGTTTTTTTCTTGAATGGTACAGTGGTAGGCTGATCCGTCATGCGGATGCTATTCTTACAAAGGCTGCAAATATGTTGAAGAAATATCAAGAAAGCAAGAAAAGTTCTGTTTTATTAGTGGCCAAAATTGGTGGAATATATTGGTGGTACCATACACTATCACACCCTGCTGAACTTACTGCTGGTTACTACAATACTGCTCTAAGGGATGGTTATGATCCTGTGGCTTCAATGTTGTCTCGTCATGGAGCTGCTTTGCATATTTCCTGTTTAGAAATGATGGACAATGAAACCCCGCCAACCTATCTTTGCAGTCCAGAAAGATTGCTCCAGCAGATATGGACCGTGTCGAAGAAAAGGATAGTACATTTGACAGGAAGAAATACCAATGAACGGTTTGATAAGGCTGGATTATGGCAAATACATGCAAACTGTTACCATCCACAGGCAGAAGCAGTAAGATCATTTACTTATTTCAGAATGAATGAGAAGATTTTCAGGGCTGAAAATTGGAATAACTTTGTCCCATTTGTGAGAAAGATGAGCACAGACATGTAA 1569 0.4251 MAENGGVACKCTERGIYGFRGARFDKRSRIRKNLRNVSMIPLFKHNGLFIWRSIAANNCIFSMDAREKSRSTTLETPGHKRVPIFVMMPVDSFGIDTSGAPRIRRIKALTISLKALKLAGVHGIAVEVWWGIVERFSPFVYNWSLYEELFKLISESGLKLHVALSFHSNMHSSSRVKGGVSLPLWIVEIGDLNKDIYYRDQNGFSNDDYLTLGVDELPLFCGRTALQCYEDFMFSFINKFESFIGSVIEEISVGLGPSGELRYPAHPFGDGRWRFPGIGEFQCYDKYMMRDLKIAACQEGKPQWGDKGPQNAGYYNSLPSGVPFFEEGQESFLSDYGRFFLEWYSGRLIRHADAILTKAANMLKKYQESKKSSVLLVAKIGGIYWWYHTLSHPAELTAGYYNTALRDGYDPVASMLSRHGAALHISCLEMMDNETPPTYLCSPERLLQQIWTVSKKRIVHLTGRNTNERFDKAGLWQIHANCYHPQAEAVRSFTYFRMNEKIFRAENWNNFVPFVRKMSTDM* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0771 522 SUPERFAMILY (Trans)glycosidases 79 521 IPR017853 -
Vvi19g0771 522 PRINTS Plant beta-amylase signature 494 508 IPR001371 GO:0000272|GO:0016161
Vvi19g0771 522 PRINTS Plant beta-amylase signature 412 422 IPR001371 GO:0000272|GO:0016161
Vvi19g0771 522 PRINTS Plant beta-amylase signature 509 522 IPR001371 GO:0000272|GO:0016161
Vvi19g0771 522 PRINTS Plant beta-amylase signature 246 255 IPR001371 GO:0000272|GO:0016161
Vvi19g0771 522 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 69 520 IPR001554 GO:0000272|GO:0016161
Vvi19g0771 522 Gene3D Glycosidases 72 522 - -
Vvi19g0771 522 Pfam Glycosyl hydrolase family 14 103 514 IPR001554 GO:0000272|GO:0016161
Vvi19g0771 522 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 391 402 IPR001554 GO:0000272|GO:0016161
Vvi19g0771 522 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 446 468 IPR001554 GO:0000272|GO:0016161
Vvi19g0771 522 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 409 432 IPR001554 GO:0000272|GO:0016161
Vvi19g0771 522 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 120 134 IPR001554 GO:0000272|GO:0016161
Vvi19g0771 522 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 374 390 IPR001554 GO:0000272|GO:0016161
Vvi19g0771 522 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 141 159 IPR001554 GO:0000272|GO:0016161
Vvi19g0771 522 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 256 278 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0771 Vvi-Chr19 8567840 8585181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0771 178 522 Glycoside Hydrolase AT5G55700 73.623 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0771 - - vvi:100254897 1086.63