Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0767 ATGGCTATTGTCGACAAGAAGTCGCTTGAAGAAGAAGCCTGTATTCTTCGTTTCTGCAAAATAGTTCTGGGTTGGGACTATGTCCAACTCCTCAAAGAATCCAAGAAAAACAGCAGAAATATTGGTGATGGAAGTGCTCCGGGCCTGAGGAAGGTGAAGGATACATACACTGACATAGATGATTATCTCGCAACTTTCGAGCCTCTTCTTTTTGAAGAAGTAAAAGCCCAGATCGTGCAGGGCAGGGATGAAGAAGAGGTGTCAGAGTGGAAGTTTGCGATAGTCCGAGAATGCAGTGAGACTGATGGGTTTAGTATACCGGTGGTTGGTTATAAGGCAGAGGAGGGTGAATCAATTTCACAAAATGATCTATTACTGCTCTCAAAAACAAAGTTTCAAGAGGGTACAAGACTGCCAACTACATATGCTTTTGCATTAGCAGAGCATCGTCAGGGAGATTTACTTAGAGTAAGAATGTGGTTAGATGGAGAGGTCAAGGGAATTAATACAGATGAAGTTGTATCTTGTCCAAGGTTGTTGAGCATGCACTCTCTTATTGGTAATCTTATTAATGATCCAAATAGAGGTTTGTATATTCTGAAGATTTGCAGTTTATCAACTATTGTTCGTGAATATATTGGTTTACAATCCATTGGGTCTCTCCCCTTCAAGGACTTGATATTAACAGCGACTGACAGCAGTCCTAGTCCTGGTGAACAGTCCTGGAAAATTCCTAGACCATTGATGGAGTTTATTGAGACAAATCACAATGAATCTCAACTAGCAGCAATACATGCAAGTCTTTCACGTAAAGCCTTTGTCCTGATACAGGGTCCCCCAGGAACAGGAAAAACACAGACTATTCTTGGGCTTCTTAGTGCCATTTTGCATGCAACTCCAGCAAGAGTGCACTCCAGGGGTGGATTGAGTGAAATAAAACGTGGGCCATATTTACCTCTCCAGGAAAAATATGTTATGTGGGGACAAGCATCTCCATGGCTAACTGGTATCAATCCTAGAGATGAAATTGTGCCCAAGGATGGTGATGATGGTGTTTTCCCTACCACTGGAAATGAATTGAAACCAGAAATAGTTACTTCCAGTCGTAAATATCGTGTACGGGTACTGGTATGTGCTCCATCAAATTCTGCGCTTGATGAGATTGTGTTGCGCCTTCTAAATACTGGTGTTCGTGATGAAAATGACCATGCGTATAATCCTAAAATCGTGCGGATTGGTCTTAAACCACACCATTCTGTTCGGGCAGTCTCCATGGATTACCTTGTGGAACAAAAACTTTCCAGCATGAACTCTACTTCTGATAAACAGAAACATGGAGCTGCTGGAAGAGATAGGGACAGCGTTCGTTCATCAATTCTGAGTGAAGCGGCAATTGTCTTCTCCACCCTTAGCTTCAGTGGTTCAAGTCTTTTCAGTAAATTGAATAGTGGGTTTGATGTTGTCATAATAGATGAAGCTGCTCAAGCTGTGGAACCAGCAACTCTCGTTCCGCTGGCAAATGGATGCAAACAAGTATTTCTGGTTGGCGATCCAGTTCAATTGCCAGCCACTGTAATTTCTCCTATTGCTGAGAAATTTGGTTATGGCATGAGCTTGTTCAAGAGATTCCAGAGGGCCGGCTATCCAGTACAAATGCTGAAAACACAATACCGCATGCATCCAGAGATAAGAAGCTTTCCTTCAAAGGAATTCTATGATGAGGCACTTGAAGATGGGCCAGATGTTAAAGATCAGACAGTGAGGTTATGGCATGACTATCGCTGCTTTGGGCCATTTTGCTTTTTTGATATACATGAGGGGAAAGAGTCCCAGCCCTCAGGTAGTGGCTCTTGGGTAAATGTTGATGAGGTTGAGTTTGTCCTCCTCATGTATCATAAATTGGTGACTAGATATCCAGAGCTGAAGTCAAGTTCTAGACTTGCAATTATATCCCCGTATAGACACCAAGTCAAGCTCTTCCGCGAGCGTTTTCAGGACACATTTGGGGTGGAGTCAGATAAAGTAGTGGACATTAATACTGTTGATGGTTTCCAGGGACGTGAGAAAGATGTTGCAATCTTTTCATGTGTTAGGGCCAGCAAAGATAAAGGCATTGGGTTTGTGGCTGATTTTCGCCGAATGAATGTCGGGATTACAAGAGCAAGGGCTTCTGTCCTGGTTGTGGGGTCTGCATCAACATTGAAAAAAGATGAGCATTGGAATAACCTATTGGAAAGTGCGGAGAAGCGAAATTGTCTTTTGAAGGTCTCCAAGCCCTATACAGCATTTTTCAGTGATGAGAACTTGAAGTCTATGGTGGCAAAGGACCAATCAATGCCAGAGGATGCAGAGGGTGGTATGGCTGTGGATAATAATGCACCCATCTATAGCAATCTGGGCGATGCTGAGCAAGGACAAGCAGCAGATGAAAATGAGTATGGGGATGGAGATGGAGATGGAGATGATGATGGAGGGTATGGTGAAGATTAG 2490 0.4313 MAIVDKKSLEEEACILRFCKIVLGWDYVQLLKESKKNSRNIGDGSAPGLRKVKDTYTDIDDYLATFEPLLFEEVKAQIVQGRDEEEVSEWKFAIVRECSETDGFSIPVVGYKAEEGESISQNDLLLLSKTKFQEGTRLPTTYAFALAEHRQGDLLRVRMWLDGEVKGINTDEVVSCPRLLSMHSLIGNLINDPNRGLYILKICSLSTIVREYIGLQSIGSLPFKDLILTATDSSPSPGEQSWKIPRPLMEFIETNHNESQLAAIHASLSRKAFVLIQGPPGTGKTQTILGLLSAILHATPARVHSRGGLSEIKRGPYLPLQEKYVMWGQASPWLTGINPRDEIVPKDGDDGVFPTTGNELKPEIVTSSRKYRVRVLVCAPSNSALDEIVLRLLNTGVRDENDHAYNPKIVRIGLKPHHSVRAVSMDYLVEQKLSSMNSTSDKQKHGAAGRDRDSVRSSILSEAAIVFSTLSFSGSSLFSKLNSGFDVVIIDEAAQAVEPATLVPLANGCKQVFLVGDPVQLPATVISPIAEKFGYGMSLFKRFQRAGYPVQMLKTQYRMHPEIRSFPSKEFYDEALEDGPDVKDQTVRLWHDYRCFGPFCFFDIHEGKESQPSGSGSWVNVDEVEFVLLMYHKLVTRYPELKSSSRLAIISPYRHQVKLFRERFQDTFGVESDKVVDINTVDGFQGREKDVAIFSCVRASKDKGIGFVADFRRMNVGITRARASVLVVGSASTLKKDEHWNNLLESAEKRNCLLKVSKPYTAFFSDENLKSMVAKDQSMPEDAEGGMAVDNNAPIYSNLGDAEQGQAADENEYGDGDGDGDDDGGYGED* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0767 829 Gene3D - 219 556 IPR027417 -
Vvi19g0767 829 CDD DEXXQc_SETX 257 558 - -
Vvi19g0767 829 Pfam AAA domain 535 731 IPR041679 -
Vvi19g0767 829 PANTHER DNA2/NAM7 HELICASE FAMILY 72 776 IPR045055 -
Vvi19g0767 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 754 IPR027417 -
Vvi19g0767 829 MobiDBLite consensus disorder prediction 777 829 - -
Vvi19g0767 829 MobiDBLite consensus disorder prediction 808 829 - -
Vvi19g0767 829 Pfam AAA domain 256 437 IPR041677 GO:0004386
Vvi19g0767 829 Pfam AAA domain 449 527 IPR041677 GO:0004386
Vvi19g0767 829 FunFam Predicted protein 557 762 - -
Vvi19g0767 829 Gene3D - 557 762 IPR027417 -
Vvi19g0767 829 CDD SF1_C_Upf1 559 748 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0767 Vvi-Chr19 8484298 8523598 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0767 - - vvi:100263445 1542.71