Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0752 ATGGATCAAAGAGAGATATATATTACATGCATCCGTCTGTATTTTCAGGTGTATTTGGTTTGTTTAAAGAGGTCAAAGGTTTATTTTTCCTGTATAATGTCCTCTGTTCTCCATATCTCTGTTTATATCTGCAATGCAGATCAGTCAGTTGTAGACCGAGCAATAAATGACATATGTATCCTTCTGCAGTGCAGTCGCCACAACCTAAATGTGGTGTCCGTTGGAAAAGGATTGGTGATGGGCTGGTTAAGATTCTTAGAAGCTGGAAAGAAATTTGATTGCATAAATGGCCCAAACACTGCCTACCCTGTCCCTGTGCATGTTGAAGAAGTCAAAGATATTGTCAGTGTTGCCCAGTATATATTGGTTGTGGAGAAAGAATCAGTGTTCCAGCGGTTAGCAAATGACAAATTCTGCAACAAAAATCGCTGCATTGTTATCACAGGAAGAGGATATCCAGATATCCCTACAAGAAGGTTTTTGCGTCTTCTCGTAGAGAAGTTGCATCTGCATGTCTATTGCTTGGTAGATTGCGATCCTTATGGCTTTGACATCCTGACAACATATCGGTTTGGTTCCATGGTCTGGTTACTTGAGAAAATAATCAATTATCTTGTCTTTTATGTATTACTTATCTCCAATTAG 645 0.3907 MDQREIYITCIRLYFQVYLVCLKRSKVYFSCIMSSVLHISVYICNADQSVVDRAINDICILLQCSRHNLNVVSVGKGLVMGWLRFLEAGKKFDCINGPNTAYPVPVHVEEVKDIVSVAQYILVVEKESVFQRLANDKFCNKNRCIVITGRGYPDIPTRRFLRLLVEKLHLHVYCLVDCDPYGFDILTTYRFGSMVWLLEKIINYLVFYVLLISN* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0752 214 Pfam Type IIB DNA topoisomerase 47 71 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Vvi19g0752 214 CDD TOPRIM_TopoIIB_SPO 120 194 IPR034136 -
Vvi19g0752 214 Gene3D - 75 203 - -
Vvi19g0752 214 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 39 194 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi19g0752 214 SUPERFAMILY DNA topoisomerase IV, alpha subunit 46 197 IPR036078 GO:0003677|GO:0005694
Vvi19g0752 214 PRINTS DNA topoisomerase VI subunit A family signature 145 166 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi19g0752 214 PRINTS DNA topoisomerase VI subunit A family signature 3 14 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi19g0752 214 PRINTS DNA topoisomerase VI subunit A family signature 177 193 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi19g0752 214 PRINTS DNA topoisomerase VI subunit A family signature 121 138 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi19g0752 214 Gene3D - 42 74 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0752 Vvi-Chr19 8279965 8282858 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0752 K10878 - vvi:100256655 310.457